Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F17 I0 R1
|
155 |
84.1 |
1797446 |
90.9% |
1633878 |
230.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,466,393 |
C→T |
11.3% |
pseudogene (1002/2513 nt) |
ydbA → |
pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,466,393 | 0 | C | T | 11.3%
| 100.7
/ 4.5
| 51 | pseudogene (1002/2513 nt) | ydbA | pseudogene, autotransporter homolog, interrupted by IS2 and IS30 |
| Reads supporting (aligned to +/- strand): ref base C (24/20); new base T (3/3); total (27/24) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.52e-01 |
GCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACG > NC_000913/1466155‑1466630
|
gggATCTGGATGGCAACGGCGGCGGTCAAGGTATTGATATCACCGGTGGCAGGGCTACGGTGGATAACCAGGGCACCATGACCGTCCCCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCTAGAGCACCATCAGCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCGCGGCAAACAACAACGGCAAAACCTCCGTTGACGGc < 2:724311/237‑1 (MQ=255)
tCAGGGGGGGCGTCCCCGGTTTTGATATCCCCGGGTACAGCGGGACCGGGGATAACAAGGGCCCCAGGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCAc < 1:675557/238‑1 (MQ=17)
aGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCCCCGGCACCCAGATTAATGGTGATGACGCCACGGCAAAAAACAACGGCAAAACCACCGTTGACCGCAAGGATTCCACCgg > 2:842494/1‑239 (MQ=255)
ggcggcggTCAAGGTATTGAAATGTCCGGTGAACGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGATAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTa < 2:854765/238‑1 (MQ=255)
tGATATCACCGGTGACAGCGCGACGGTGGATAACCAGGGCACCATGACCGTCACCGACCCGCAGTCCATGGGGATCCAGATCGACGGCGACACGGCCATCGTCAATAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACCCAGATTAAAGGTGATGCAGCCACGGCAAACAACACCGGCAAAACCACCATTGAAGGCACGGATTCCACCGCTACGGCAATAAACggacaac > 1:259169/1‑234 (MQ=14)
atCACCCGTGACCGGGCGACGGGGGATAACCAGGGGACCATGCCCGTCCCCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCCCCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACgg < 2:369237/239‑1 (MQ=18)
cGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCCAACACCAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGAACGGAAATCACCGGAAATAACGGCAAAg > 2:858654/1‑239 (MQ=255)
cGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATTGCTGGCAATAACGGgaagg < 2:862592/239‑3 (MQ=255)
tGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCAGGAGTCCATGGGTATCCAGATCGACGGTGACACGGCCATCGTCACTAACGCAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGGTAGGACGCCACGGCAAACAACAACGCCAAAACAACCGTTGACGGCAAGGATTCCACCGGCACGGAACTCAACGGTAATAACaaaaaaagaa > 1:735053/1‑235 (MQ=17)
cgcgACGGTGGATAACAAGTGCACCATGCCCGTCACCGATCCGGGGTCCATAGGTATCCAGATCGACGGTGACCAGGCCATCGTCAATAACGAAAGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGGGATGACGCCACGGCAAAAAACAACGGAAAAACCCCCGGTGACGGCAGGGCTTCACCCGGCACGGAAATTAACGGAAATAACCGGAAAggaaataaga > 1:619982/1‑230 (MQ=255)
ggggtttgtgaaaaCAAGGGCACCATGACCGTCACCGATCCTGCGGTCCTGGGTATCCAGAGCGACGGTAGCAAGGCCAAGGCAAATAACGGAGGCGAGAGCACCAAACACAACCGTGGCAGCGGCCTCCAGATTAAGGGTGATGATGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGa < 1:704708/227‑1 (MQ=17)
cgggtgATAAAAAGGGTACCATGACCTTACCCGTTCCGGAGTCCATGGGTTTCCAGATCGACGGGTAAAAGGCCATCGGCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACgg < 1:426388/233‑1 (MQ=18)
cGGTGGATAACAAGGGCACCATGACCGTCACCGGTCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACgg < 2:97730/238‑1 (MQ=255)
ggTTGATAACCAGGGCCCCCTCCCCGTCACCGACCCGGAGTTCATGGGTCTCCAGATCGGAGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGTTGATGGCGGCGCGGGAAGTAACAACGGGAAAGCCACCGTTGACGGTAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCg < 1:282641/239‑1 (MQ=25)
gCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATAAACGGAAATAACGGAAAAGGGA‑TTCAGGACGCGGACCTgggttcacgc > 2:843491/1‑231 (MQ=17)
cATGACCGGCCCCTATCCGGGGGCCTTGGGTACCCAGATCGGCGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGGTA‑TTCAGGACGGCGATCTGGATGTCAgcggcg < 1:842494/239‑1 (MQ=18)
tGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAgcggcggc > 2:494290/1‑239 (MQ=255)
cgtgaaggATGCGGTGTCAATGGGGAACAAGAGCGACGGGGAAAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGGCCCCTGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGt < 2:842806/231‑1 (MQ=18)
aCCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGCGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCAACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCCATCTGGATGTCAGCCGCGGCGGCCACg > 2:364180/1‑238 (MQ=255)
gAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGCAATAACGGAACAGTTA‑TTCAGCAAGGCGTCCCGAATGTCagcagcccgggtacgggtattaaaa > 2:724751/1‑219 (MQ=18)
gAGTCCATGGGTATCCAGATCGACGGGGACAAGGCCATCGTCAATAACGCAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGACACGGCAAACACCACCGGCAAACCCACCCTTGACGGCAAGGATTCCACCGGTCCGAAAATAAAATGCAATAACGGAAAGGTTATTTGAGCAC‑GCGCCGTGGATGTCAGCGGCGGGCGGCACGGGAtgagca > 1:587283/1‑233 (MQ=255)
cATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGCAATCAACGGTAATAACGCAAAAGTTA‑TTACGGACGGCGATCTGGATGTCACCGGCGCCGGTCCCGGCATTGagattccc > 2:468841/1‑234 (MQ=18)
aTGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGCTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGGCACGGGATTGATTTAACCg > 2:807278/1‑238 (MQ=255)
gTATCCAGATCGGTGGTGAAAAGGCCATCGGCAAAAACGAAGGCGAGAACCCGCACACCAACGGTGACCGCGGCACCCAGATTAAGGGTGATGACGCCACGGTAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGa < 2:786074/238‑1 (MQ=17)
tCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCCGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGCCGGCGCCTTGGATGTAACCGACGGGGGGCACGGGATTGAAATCAACGGCGACaag > 1:854081/1‑237 (MQ=18)
tCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTAACGGGATTGATATAACCGGccaacg > 2:856889/1‑233 (MQ=255)
tccgtggTGAAAAGGGCATGCTCAAAAACGGAGGCGTGAGGTGCAACACCAACCGTGACCGCGGCCTTCAGATTACTGGTGATAACGCCACGGTAAACAACAACGGCAAAACCACCGTTGACGGTAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCaa < 2:422871/232‑1 (MQ=14)
tCGACGGTGACAAGGCCAACGACAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCaa < 2:600731/237‑1 (MQ=255)
cGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGCCACGGTATTGGTATACCCGGCGACAGCGCAACgg > 2:296980/1‑239 (MQ=255)
aGGACATCGTCAATAAAGAAGGCGAGAGCACCATCACCAACGGTTGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAg < 2:735053/239‑1 (MQ=255)
ccgtCGTCAATAACGAAGGCGAGAGGACCAACAACAACCGTTGCACCGGCCCCCGGATTAATGGGGATGAAGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAggg < 2:825209/235‑1 (MQ=17)
aTCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATACCCGGCGCACGCCCAACGGTGGGAAAAAAgggaa > 2:261446/1‑236 (MQ=17)
cGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGGAATAACGGAAAAGTTA‑TTCAGGACGGGGATCTAGATGTCAGCGGCGGCGGGCACGGGATTGGTATAAACGGCGCAAGCGCAAAGGGGGGAAAAAAggggagcc > 1:716532/1‑234 (MQ=14)
cgaagggccgagCACCAACACCAACGGTGGACCCGGCCCCCAGATTAATGGTGATGACGCCACTGAAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGGCCGTCa < 2:755040/230‑1 (MQ=14)
aGGCGAGGGCACCTTCCCCAACGGTCGAACCGGCACCCAGATTAAAGGAGAAGGCGCCACCGCAAACAACAACGGCAAAACCATCGTTGACGGGAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCAGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCAcc < 1:364180/238‑1 (MQ=14)
ggCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAGCGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCACCGGCAATAACGGGAAGGTTA‑TTCAGGACGGCGATCTGGAGGCCAGCGGCGGCGGGCCAGGTATTGAAATAACCGGCGCCAGCGACACGGGGGGTAACAAGGGCACCATAAACGACAcca > 1:346800/1‑237 (MQ=11)
agCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCACCGGCGACAGCGCAAAGGGGGGTAACAAGGGAACCATGACCGTCACCGATCCGGa > 2:830415/1‑239 (MQ=255)
cATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGGGGATCACAAGGGCACCATGACCGTCACCGATCCCGAGccc > 2:417879/1‑238 (MQ=255)
aCGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATc < 2:854081/239‑1 (MQ=255)
accggcaccCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGGACGGAAATCAACGGTAATAACGGGAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGGAACGGGATTGAGATCACCGCCCACACGGCAACGGGGGAGAACAAGGGCACCAGGACCGACCCCGATCCGCGGGCCATCggcaccccacttaa > 1:715201/1‑227 (MQ=14)
agttAATGGTGAAGAGGACACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAgg < 2:776380/237‑1 (MQ=255)
aTTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCgcacaagc > 2:813074/1‑232 (MQ=255)
tagtggggttgaCGCCACGGTAAACAACAATGGCAAAACCACCGTGGACGGTAAGGATTCCAGCGGTACGGAAAACAACGGTAATAACGGAAAAGTGA‑TTCAGGACGGCGATCTGGATTGCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCgg < 1:193843/230‑1 (MQ=14)
atgaCGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTTACGGGGCCCcggcgggtttttaa > 2:161692/1‑231 (MQ=255)
aaaaaaCAACCCAAAAACCCCCGTGGCCCGCAAGGATTGCACCGGTTCGGAAATCAAACGTAAAAACGCAAAATATA‑TTCAGGACGGCGAGCTGGATTGCGTCGGAGGCGGTCACGGTATGTATAGCACCGGCTGCAGCGCAACGGTGGATAACAAGGGCGCCATGACCGTAACGGATCCGGAGGCCATCGGTAACCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCgag < 1:468841/238‑1 (MQ=255)
aacaacaacGGCAAACCCTCCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCgaga < 2:183817/238‑1 (MQ=255)
acaccGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAAGAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGcc < 2:587283/239‑1 (MQ=255)
tggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGGATTGATATCACCGGTGACAGCGCAACGGTGGATAACAAGGGCACCCTGACCGTCCCCGGACCGGGGGCCCTGGGGAGCCAGGACGCCGGGGACCAAGCCGATGTTAAAAAAGaaagggaaaaccacaaac > 1:41117/2‑223 (MQ=11)
tggCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCAAGGTATTGATATCACCGGTGACAGCGCGACGGTGGGTAACAAGGGGACCATGAACGTAACCGTTCCGGATTCCATTGGTGTCCCAGTAGACGGAGAACAGGCCGTTGTTaacaaacaaacagcaaacgcccta > 1:183817/2‑219 (MQ=11)
cGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGCCGGCGGTCACGGAATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAAGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAAAAACGAAGGCGAGAACGCCATc > 2:259291/1‑238 (MQ=255)
gCAAAACCACCGTTGACGGTAAAGATTCCACCGGTACGGAAATCAACGGTAATAACGGGAAAGTGA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGGCCATGGGTATCCAGATTGCCGGGGACCAGACCGTCGGTaacaaaaaaagaggaagggacaaccca > 1:394406/1‑217 (MQ=11)
cccacggtGACGGCAAAGATTCCCACGGTAAGGAAACCAACGGGAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGt < 2:394406/232‑1 (MQ=17)
cAAGGGTTCCCCCGGTACGGAAAACAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGGCATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACg < 2:411935/238‑1 (MQ=255)
cAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACg < 2:716532/238‑1 (MQ=255)
|
GCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGTGACAGCGCGACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATGGGTATCCAGATCGACGGTGACAAGGCCATCGTCAATAACGAAGGCGAGAGCACCATCACCAACGGTGGCACCGGCACCCAGATTAATGGTGATGACGCCACGGCAAACAACAACGGCAAAACCACCGTTGACGGCAAGGATTCCACCGGTACGGAAATCAACGGTAATAACGGAAAAGTTA‑TTCAGGACGGCGATCTGGATGTCAGCGGCGGCGGTCACGGTATTGATATCACCGGCGACAGCGCAACGGTGGATAACAAGGGCACCATGACCGTCACCGATCCGGAGTCCATCGGTATCCAGGTTGACGGCGACCAGGCGGTTGTTAACAACGAAGGCGAGAGCGCCATCACCAACGGTGGCACCGGCACG > NC_000913/1466155‑1466630
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
