Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F17 I0 R1
|
155 |
84.1 |
1797446 |
90.9% |
1633878 |
230.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,316,228 |
A→C |
22.0% |
V331G (GTG→GGG) |
phnM ← |
ribophosphonate triphosphate hydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,316,228 | 0 | A | C | 22.0%
| 125.0
/ 2.3
| 59 | V331G (GTG→GGG) | phnM | ribophosphonate triphosphate hydrolase |
| Reads supporting (aligned to +/- strand): ref base A (35/9); new base C (4/11); total (39/20) |
| Fisher's exact test for biased strand distribution p-value = 3.77e-04 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.89e-01 |
CTGAGTTTGTTCCCGCAGGCGGAGTTCCGCCAGCAGGCTGTCTTTCCCGGAGCCGGACGGCCCCATTAACCAAATCAGTTTTCCCATCATCAGAACACCCTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCACGTTCATGCCATGCTTGCGCGAGGCTTCC > NC_000913/4315994‑4316449
|
cTGAGTTTGTTCCCGCAGGCGGAGTTCCGCCAGCAGGCTGTCTTTCCCGGAGCCGGACGGCCCCATTAACCAAATCAGTTTTCCCATCATCAGAACACCCTTTTACCCTGACGCCAGACGTGGTCGATATGAACATGATTGT‑CCTTGCGATGCGCCACCCCCAGGTCGGAGCGGTTGCCCTTGCCAATAACCCCGCGATCCTGGCGGGTAAGCGCCTGGG‑CTGGGTTTTTACTCCCCa > 1:181059/1‑238 (MQ=255)
tGAGTTTGTTCCCGCAGGCGGAGTTCCGCCAGCAGGCTGTCTTTCCCGGAGCCGGACGGCCCCATTAACCAAATCAGTTTTCCCATCATCAGAACACCCTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCCCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTCGTCCCCa > 2:585538/1‑237 (MQ=255)
tttGTTCCCGCAGGCGGAGTTCCGCCAGCAGGCTGTCTTTCCCGGAGCCGGACGGCCCCATTAACCAAATCAGTTTTCCCATCATCAGAACACCCTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGTGTTTTAATCACCAGCTTc > 1:528902/1‑238 (MQ=255)
ccccggcgcttttttttCCCGGGTCCGGGCGCCCCCATTACCAAAATCAGTTTTCCCAACCACAGAACACCCGTTTCCCCGTACGCCAGACGGGGTCGATATGAAGATGGTTTG‑CCTTGCGGTGCGCCAGCCCCAGGTCGGCGCGTTTCCCCTCGCCAATCCCCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCCCCAGCTTCACCGCCTGCGGCAGCGTAAAGCgg < 1:341182/225‑1 (MQ=255)
gggCTTTCTTTCCCGGCCCCGGCCGCCCCCATTACCCAAACCAGTTTTCCCATCAACAGAACCCCCTTTTCCCCTGACGCCAGACGGGGTCGATAGGAATATGATTGC‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCCCCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCCCCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGct < 1:81942/237‑1 (MQ=255)
aGCCGGACGGCCCCATTAACCAAATCAGTTTTCCCATCATCAGAACACCCTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCCCCTGCG‑CTGGATTTTTAGTCACCAGCTTCCCCGCCTGCGGCAGCGTAAAGCGGGTGGTCTGGTCACCGGCGCcgg > 1:846816/1‑238 (MQ=255)
ccGGACGGCCCCATTAACCAAATCAGTTTTCCCATCATCAGAACACCCTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGCAAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGa > 1:15089/1‑239 (MQ=255)
ggACGGCCCCATTAACCAAATCAGTTTTCCCATCATCAGAACACCCTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGaaa > 2:543682/1‑239 (MQ=255)
cccTTTACCCAAATCATTTTTCCCTGCATCAAAACCCCCTTTTACCCGGACCCCAGACGGTGTGGATATAAATATGTTTGC‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCa < 1:427662/239‑1 (MQ=255)
tccttttcCCCTTCACAAGACCACCTTTTTCCCCGGCCCCGAGACGGGGGCGATAGGAATTGAATTTC‑CCTTCCAGGGCCCCACCGCCGGGGCGGCGCTTTGGCCCTCGACCATCACCCCGGGATCCTGGAGATTAGGCGCTTGCG‑TGGGATTTTTAGTCCCCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTgg < 1:645756/235‑1 (MQ=255)
tCCCCTCATCAAAACCCCTTTTTCCCCTCGCGCCCGCCGTGGTCGTTATGAATTTGTTTGC‑CCTTGCGATGCGCCAGCACCAGGCCGGCGCGTTTGCCCTCGCCAACCACCCCGGGACCCTGGAGATTAAGCCCCTGCG‑GTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGgta < 1:369246/239‑1 (MQ=255)
aaccgAACCCCCTTTTACCCGGGCGCCAGCCGTGGTCGATATGAATATGATTGA‑CCTTGCGAGGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCg < 2:152511/235‑1 (MQ=255)
aaccgcctttttGCCCTGACGCCGGGCGTTGTCGATGTTAATATG‑TTGTGCCTTGCAACGCGCTAGCACCAGGTCGTGTCGTTTGACCTCGCCAATCACCCCGCGTTCCTGGAGATGAGACGCCTGCT‑TTGGATTTTAAGGCACAAGCTTCAGCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAag < 1:501786/231‑1 (MQ=255)
aaCACCCTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGCAATGCCGCCTCGAGCAGGCTGGCGGGGGTGTAGTCGGaaca > 2:254829/1‑237 (MQ=255)
cccccTTTACCCCGGACGCCGGGCTGTGTCTATTTGAATATGTTTGC‑CCTTGCGATGCCCAAGCCCCAGGTCGGCGCGTTTGCCCTCGCCAATCCCCCCGCGGTCCTGGAGATGAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAagaga < 1:105725/237‑1 (MQ=255)
cacCCTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGCGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCCCCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAACTGCCGCATCCAGAGGGGGGGCggggggggaagcggaggagg > 1:784710/1‑223 (MQ=255)
ccTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCCCCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGGTCATCTGGTCAACGGCCACGCGAAATGCCGCATCGCACCGGCTGGCGGGGTCGATGTCggcacgaagga > 1:50458/1‑230 (MQ=255)
ccTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGTCGACGCGAAATGCCCCATCGAGCAGGCTGGCGGGgtcttatacggagaacaggg > 2:501786/1‑221 (MQ=255)
ccTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGAGCCGAAATGCCGCCCCGAGAAGGCTGGCGGGGGAGTAGGCGGGCGAGAGGa > 1:250370/1‑239 (MQ=255)
ccTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTGGTAGGCGGGAGAGAGGa > 2:804206/1‑239 (MQ=255)
ttttACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGTGCATCGGCGCCCCGAAATGCCCCATCGAGCAGGCTGGCGGGGGGGTAGGCGGaaaaaggggaa > 1:647367/1‑230 (MQ=255)
tACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCCCCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGACCAGGCTGGCGGGGGAGAAGGCGGAAGAGAGGAAATcc > 1:91492/1‑239 (MQ=255)
tACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAACCGGTTGCTCTGGTCATCGGCGACGCGCAATGCCGCATCGAGCAGGCTGGCGGGGTAGAAGTCGGAagcgggggaatcc > 2:291422/1‑228 (MQ=255)
tGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCCCATCGAGCAGGCTGGCGGGGTAGGAGTCGGAAGGCGGGGTATCcaacc > 2:837892/1‑235 (MQ=255)
gACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGCCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGGGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGCAGGCGGAAAAGAGGATATCcag > 2:444661/1‑235 (MQ=255)
aGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCCTCGGCGCCCCGAAATGCCGCCTCCAGCAGGCTGGCGGGGTAGTAGTCGGAAAAGAGGAACCCCAAcaagccaagc > 1:754952/1‑239 (MQ=255)
gTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTTCGccc > 2:81813/1‑238 (MQ=255)
tatgaTTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACCCGAAATGCCGCATCGGGCAGGCTGGCGGGGGGGTAGCTGGAAAGGAGGATATCCAGAAGGCCAAACCGCGcccagcaaccggc > 1:387173/1‑227 (MQ=255)
aTTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGCAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGgccgcc > 2:192342/1‑238 (MQ=255)
aTTGC‑CCTTGCGAGGCCCCAGCGCCAGTGCGGCGCGTTTGCCCCCCCCAATCCCCCCGCGATCCGGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCa < 2:181059/239‑1 (MQ=255)
t‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGtt > 2:472372/1‑239 (MQ=255)
t‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGGTCACTGGCCGCCACGtt > 2:168910/1‑239 (MQ=255)
t‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGGGGGAAGCGGGAAAGGGGAAATCCCACAGGCCAAGCGGGGCCCGTTCACCGGCCCCCACggt > 1:718514/1‑237 (MQ=255)
cTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCCCGTTg > 2:579710/1‑238 (MQ=255)
cgcCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGCAGTAGTCGGAAGAGAGGAAATCCAGCAAGc > 2:67213/1‑197 (MQ=255)
gccccgggTGGGCGCGTTTGCCCTCGCCAATCACCCCGGGATCCTGAAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCCCCAGCTCCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAgccg < 2:442734/233‑1 (MQ=255)
gCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGCAATGCCGCATCGAGCAGGCTGGCGGGGGAGTAGTCGGAGGGGAGGATATCCAGGAGGCCAAGGTGCGCCAGTTCACTTGCCGCCCCGTTGCCGGAGTGCGAggc > 2:445427/1‑236 (MQ=255)
cccAGGGCGGCCGGTTTGCCCTCGCCAATCCCCCCGCGATCGTGGAGATTAAGTCCCTGCG‑CTGGATTTTTAGCCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAgccgcc < 2:91492/238‑1 (MQ=255)
ggTCGGCGCGTTTGCCCCCCCCAAACCCCCCGGGATCCTGGAAATTAAGCGCCTGCG‑CTGGATTTTTAGTCCCCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCgcgc < 2:828766/239‑1 (MQ=255)
tCGGCGCTTTTGCCCTCGCCAATCACCCGGCGATCCTGGAATTTAAGCGCCTGCG‑CTGGATTTTTAGTCCCCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGca < 2:528902/238‑1 (MQ=255)
cgcgTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGGAGGAGTCGGAAGGAAGGGAATCCAGCAGGGCCACCCGGGCCCGTTCCCGGGCCCCCCCGTTTCCggggggggggccccccgccccaaaa > 1:774915/1‑216 (MQ=255)
cgcgTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGCCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAAAGGCAATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGGATGCGAGCCGCCGCGCCCaaaa > 2:196743/1‑237 (MQ=255)
tGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTTGCCGCCCCGTTGCCGGAGGGCGAGCCGCCGCGCCCAATATTCgc > 2:579917/1‑237 (MQ=255)
ccctcccAACCCCCCCGCGATCCTGGGACTTAAGCGCCTGGG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGgcgcg < 2:754952/234‑1 (MQ=255)
cgcaaactcccccGCGATCCTGGAAATTAAGCGCCTGCC‑CTGGATTTTGTGGCCCCAGGTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGccc < 2:566014/230‑1 (MQ=255)
atccccgctcgATCCTGGGGTATAGGCGCTGGCGTCTGG‑TTTTTGGGCACCGGCTACACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCAGCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAg < 2:264411/230‑1 (MQ=255)
cccccccGGGATCCGGGAGTTTAGGGGCCGGCG‑CGGGATTTTTAGTCCCCAGCTGCCCCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGc < 2:647367/236‑1 (MQ=255)
ccccccggagcccgggAAATTAAGCGCCTGGC‑CTGGATTTTTAGGCCCCAGCTGCGCCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCa < 2:15089/225‑1 (MQ=255)
cggctaTCCGGGAGATTAAGCGCCTGCG‑TTGGATTTTTAGTCCACGTGTGCCCCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCACGtt < 2:618634/234‑1 (MQ=255)
tGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGCTATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCACGTTcctgccca > 2:843326/1‑236 (MQ=255)
tAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCCGGCACAATATTCGGCGCGCCCATCCGCACGTTCATGCCATGCTTccgc > 2:851526/1‑239 (MQ=255)
tAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGGGCGAGCCGCCGCGCCCAATATTCGGCGCGCCCATCAGCCCGTTCATGCCCTGCTTgcgc > 2:468023/1‑239 (MQ=255)
cttGCT‑CTGGATTTTTGGCTCCCAGTTTGACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCACGTTCATGCCATGCTTGCGCGAGGc < 2:250370/236‑1 (MQ=255)
tGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCCTCAGCACGTTCATGCCATGCTTCGGCGAGGcgt > 2:450187/1‑236 (MQ=255)
tGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCCCGTTcatgccatgc > 2:167873/1‑225 (MQ=255)
tGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCCCGTTCATGCCATGCTTGCGCGAGGCtt > 2:112361/1‑238 (MQ=255)
tGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGGAGTAGTCGGAAGAGAGGATGTCCAGCAGGCCAAGCTGCGCCAGTTCACTCGCCGCCCCGTTGCCGGCGGCGGGGCCCCCGCGCCCCAAATTCGGCGCGCCCATCAAGACGGTACTGCCAAGCTTGGGCGAggggtc > 1:295907/1‑235 (MQ=255)
gcg‑cTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACACTATTCGGCGCGCCCATCAGGACGTTCAGGCCATGCTTGCGCGGGGCTTc > 2:296868/1‑238 (MQ=255)
cg‑cTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCACGTTCATGCCATGCTTGCGCGAGGGTTcc > 2:760849/1‑238 (MQ=255)
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CTGAGTTTGTTCCCGCAGGCGGAGTTCCGCCAGCAGGCTGTCTTTCCCGGAGCCGGACGGCCCCATTAACCAAATCAGTTTTCCCATCATCAGAACACCCTTTTACCCTGACGCCAGACGTGGTCGATATGAATATGATTGT‑CCTTGCGATGCGCCAGCACCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTAAGCGCCTGCG‑CTGGATTTTTAGTCACCAGCTTCACCGCCTGCGGCAGCGTAAAGCGGTTGCTCTGGTCATCGGCGACGCGAAATGCCGCATCGAGCAGGCTGGCGGGGTAGTAGTCGGAAGAGAGGATATCCAGCAGGCCAAGCTGCGCCAGTTCACTGGCCGCCACGTTGCCGGAGTGCGAGCCGCCGCGCACAATATTCGGCGCGCCCATCAGCACGTTCATGCCATGCTTGCGCGAGGCTTCC > NC_000913/4315994‑4316449
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
