Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F97 I2 R1
|
11 |
65.9 |
2309030 |
94.5% |
2182033 |
142.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,824,237 |
G→A |
M613I (ATG→ATA) |
spoT → |
bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,824,237 | 0 | G | A | 97.1%
| 181.1
/ NA
| 72 | M613I (ATG→ATA) | spoT | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| Reads supporting (aligned to +/- strand): ref base G (2/0); major base A (42/25); minor base C (1/1); total (45/27) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATGGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATATTCAAAGTTTGAATACG > NC_000913/3824097‑3824375
|
cTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGGAGAGTTTATCGc > 1:922987/1‑143 (MQ=255)
aTCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCtgt > 1:243295/1‑143 (MQ=255)
tCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGCAGTTTATAGCtgtg > 1:74613/1‑143 (MQ=255)
tcTTTGCGATATGCTCCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGaa < 1:303318/142‑1 (MQ=255)
ttggCGAAATGCTGCCGCCCTATCCCGGGCGACCCGAGTATGGCCCACGTCAGCCCGGGTAAAGGGCGGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTAGAGCTGTGGAATg < 1:13388/140‑1 (MQ=255)
gAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTCCCAGAACGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATa > 1:716916/1‑143 (MQ=255)
gAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATa > 2:739369/1‑143 (MQ=255)
aaTGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATaaa < 1:539548/143‑1 (MQ=255)
tgctgcCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGGGATCCACCATGAATCCTGCCGTAATATCCGTGGTTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAaga > 1:107098/1‑143 (MQ=255)
tgcCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGCGCCAGAGAAGTGTATAGCTGTGGACTGGGATAAAGAGAc > 2:692939/1‑143 (MQ=255)
cTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAg > 2:67771/1‑143 (MQ=255)
cTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAACGGGATAAAGAGACGGCGCAg > 1:165112/1‑143 (MQ=255)
aTTGCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGGGATCCACCATGAATCCTGCCGTAATATCCGAGGCGACCAGAAAGCGCCAGAGAAGTTTATAGCTGGGGAGTGGGATAAAGAGACGGCGCAGGa > 2:43076/1‑143 (MQ=255)
aTTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGACAGAGCCAGAGAAGTTTATGGATGTGGAATGGCATAAAGAGACGGCGCAGGa > 2:728178/1‑143 (MQ=255)
cGACCCGATTACCGCCCACGTCAGCCCCCGTAACAACCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTtcatca < 1:309920/143‑1 (MQ=255)
ccGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGGCGGCGCAGGCGGTCATCACCGa > 2:1596/1‑143 (MQ=255)
ccGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCGGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCCCCgg > 2:366784/1‑142 (MQ=255)
ccGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGATAGGGGCTGTTTAATGGGATAAAGAGACGGCGCAGGAGGTCATCACCGa > 2:991880/1‑143 (MQ=255)
gATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGaaa > 1:872318/1‑143 (MQ=255)
tCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCGGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGGGGGAGTTCGTCCCCGGGATCAAg > 2:644678/1‑143 (MQ=255)
ccACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTgg > 2:172564/1‑143 (MQ=255)
cACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGga < 2:727993/143‑1 (MQ=255)
cGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATACAGCGACGGCGCCGGAGTTCAGCACCGAAATCACGGTGgaga > 2:959390/1‑143 (MQ=255)
ccccGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCa > 1:463263/1‑143 (MQ=255)
ccccGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGAGCATAGCTGTGGAATGGGATAAAGAGACGGCACAGGAGTTCATCACCGAGATCAACGGGGCGATGTTCa > 2:624987/1‑143 (MQ=255)
cgggTAAAGGTCTGGGGATGCAGCAGGGGGCCTGGCGTAATATCCGTGGGTAGGAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAAGGGGATAAAGAGACGGCGCAGGAGTTCAGCACCGAAATCAAGGTGGAGATGTTCAat < 2:163468/141‑1 (MQ=255)
ccGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTCTAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAat > 1:613613/1‑143 (MQ=255)
aaGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAg < 1:343445/143‑1 (MQ=255)
aGGTGTGGTGATGCATCATGGATCCTGCCGTAATATCCATGGCTACCAGAAAGAGCCAGAGAAGTGTATAGCTGTGGAATGGGATAAAGAGATGGCACAGTAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAgg < 2:939421/143‑1 (MQ=255)
ggTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAggg < 1:67771/143‑1 (MQ=255)
gTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAACCAGAGAAGTTCATAGCCGTGGAATGGGATAAAGAGCCGACGAAGGACTTACGCACCGAAATCAAGGTGGAGAAGTGCAATCATCACGGt > 2:343070/1‑143 (MQ=255)
cTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGCTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGCAATCAAGGTGGAGCTGTTCAATCATCAGGCTgc > 2:798453/1‑143 (MQ=255)
gATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTgg < 1:579499/143‑1 (MQ=255)
gATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGAGAAAGAGACGGCGCAGGAGTTCATCACAGAAATCAAGGTGGAGATGGTGAATCATCAGGGTGCGCTgg > 1:69343/1‑143 (MQ=255)
aTCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGc > 2:119389/1‑143 (MQ=255)
caccaTGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCaaa > 2:203351/1‑143 (MQ=255)
accaTGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGAGGAGATGTTCAATCATCAGGGTGCGCTGGCAAAc > 2:91338/1‑143 (MQ=255)
ccaTGAATCCTGCCGTACTCTCCGTGGCTACCAGCAAGAGCCAGAGAAGTTAATAGCTGCGGCATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGGTGTTCACTCATCCGGGTGCGCTGGCAAAcc > 2:445895/1‑143 (MQ=255)
ccaTGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGCGAAGTCTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCACGGCGGCGCAGTGCAATCAGCAGGGTGCGCCGGCAAccc > 2:200214/1‑143 (MQ=255)
cgtGACTCCAGCCGTAATATCCGTGGGTACCAGAAATAGCCAGAGAAGTTTAGAGCTGTGGAATAGGATAAAGAGACGGCGCATGAGTTCATCACCGAAATCATGGTAAGGATGCTCACCCCTCAGGGTGCGCTGGCAAACCt < 2:249352/141‑1 (MQ=255)
caTGAGTCCCGCTGTACTATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCt < 2:457926/143‑1 (MQ=255)
tGAATCCGGCCGTAATATCCGTGGCAACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGCGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGa < 2:542360/143‑1 (MQ=255)
gAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGAc < 2:472349/143‑1 (MQ=255)
ttcggCCGGAAGAGCCGTGGCTACCAGAGAGAGTCAGAGAAGTTTAGAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGAcggc < 1:590369/139‑1 (MQ=255)
tGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACggcggc > 1:874729/1‑143 (MQ=255)
gCCGTAATATCCGTGGCTACCCGAAAGAGCCAGAGAAGTTCAGAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCCAAATCAAGGTGGAGATGTTCAACCATCAGGGTGCGATGACAAACCTGACGCCGGCa > 2:139608/1‑143 (MQ=255)
gCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAAGTGGAGATGTTCAATCACCCGGGTGCGCCGGCAAACCTGCCGGCCGCa > 2:139606/1‑143 (MQ=255)
cGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAAt < 1:23319/143‑1 (MQ=255)
aagatCCGCGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGTGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTaa < 1:652698/140‑1 (MQ=255)
tCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGGCGGCGGCAATTaccacc > 2:545870/1‑143 (MQ=255)
tCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGGGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAAcacc > 2:545832/1‑143 (MQ=255)
tACCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTc > 1:824941/1‑143 (MQ=255)
aCCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCg > 2:318955/1‑143 (MQ=255)
aCCAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACATGACGGCGGCCATTAACACCACGGCTTCg > 2:245330/1‑143 (MQ=255)
cAGAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGaa < 1:1596/143‑1 (MQ=255)
gAAAGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAata < 1:544584/143‑1 (MQ=255)
aaGAGTCAGAGATGTTTATTGCTGTGTAATGGTATAAAGATACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATAtt < 1:443791/143‑1 (MQ=255)
aaGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATAtt < 1:739369/143‑1 (MQ=255)
aaGAGCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATAtt < 1:373128/143‑1 (MQ=255)
gagCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATATTCa < 2:95972/143‑1 (MQ=255)
agCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATATTCaa > 2:775743/1‑143 (MQ=255)
gCCAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCATGGTGTAGATGTTTTATCATCAGTGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATATTCaaa < 1:590169/143‑1 (MQ=255)
ccAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCCAGGTGGAGATGTTCAATCATCAGGGTGAGCTGGAAAACCTGACGGAGGCAATTAACACCACGACTTCGAATATTCAAAg > 1:143417/1‑143 (MQ=255)
ccAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATATTCAAAg > 2:865833/1‑143 (MQ=255)
ccAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCGGGCAAACCTGACGGCGGCAATTCACACCACGACCCCGCCTATTCAAAg > 2:117667/1‑143 (MQ=255)
ccAGAGAAGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGATCATCACCGAAATCAAGGTGGAGATGTTAAATCACCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAAGACGACGACTTCGAATATTCACAg > 1:375691/1‑143 (MQ=255)
gagaAGTTTCTCGCTGGGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGCTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATATTCAAAGttt < 2:924073/143‑1 (MQ=255)
aaGTTTATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATATTCAAAGTTTGaa < 1:823277/143‑1 (MQ=255)
tttATAGCTGTGGAATGGGATAAAGAGACTGCGCAGGGGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATATTCAAAGTTTGAATAc > 2:418365/1‑143 (MQ=255)
tttATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATAGTCAAAGTTTGAATAc > 1:987460/1‑143 (MQ=255)
tttATAGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGAGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACAACGACTTCGAATCGTCAAAGTTTGAAtgc > 2:213803/1‑141 (MQ=255)
ttATAGCGGTGGAATGGGCTAAAGAGAGGGCGCAGGAGTTCACAACCCAAGTCAAGGTAAAATTGAGAATTGTTTGTGGTGGGTTGCCAAACCTGACGGCGGCAATTAATACCTCGATTTCGAATATTCAAAGTTTGAATACg < 2:243295/143‑1 (MQ=255)
|
CTGATCACCTTTGCGAAATGCTGCCGCCCTATTCCTGGCGACCCGATTATCGCCCACGTCAGCCCCGGTAAAGGTCTGGTGATCCACCATGAATCCTGCCGTAATATCCGTGGCTACCAGAAAGAGCCAGAGAAGTTTATGGCTGTGGAATGGGATAAAGAGACGGCGCAGGAGTTCATCACCGAAATCAAGGTGGAGATGTTCAATCATCAGGGTGCGCTGGCAAACCTGACGGCGGCAATTAACACCACGACTTCGAATATTCAAAGTTTGAATACG > NC_000913/3824097‑3824375
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
