Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F18 I30 R1
|
5 |
106.6 |
3444073 |
97.7% |
3364859 |
147.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009273 |
2,860,628 |
T→A |
I95F (ATC→TTC) |
rpoS ← |
RNA polymerase, sigma S (sigma 38) factor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,860,628 | 0 | T | A | 99.2%
| 387.8
/ NA
| 120 | I95F (ATC→TTC) | rpoS | RNA polymerase, sigma S (sigma 38) factor |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (55/64); minor base C (0/1); total (55/65) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 121 total aligned reads displayed.
AAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGAT > CP009273/2860486‑2860773
|
cgCGGAAACCACGTCCCGGTTCCAACTTCTCCACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCcgg < 2:289493/148‑1 (MQ=255)
gAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTTGAACATCcggc > 1:1033440/1‑146 (MQ=255)
aaCCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCcggcgg < 1:1339177/146‑1 (MQ=255)
aaCCACGTTCCGGGTCAAACTTCTCGACCGAGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCga > 2:917290/1‑149 (MQ=255)
aCGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAgg > 2:1695319/1‑149 (MQ=255)
gTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGCCGCAAGTTACTCTCGAACATCCGGCGGCGagag > 1:248088/1‑146 (MQ=255)
gTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCg > 2:953413/1‑149 (MQ=255)
tCCGGGTCAAACTACTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGCTTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGc < 1:1099152/146‑1 (MQ=255)
gTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATACGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACAt < 1:542754/146‑1 (MQ=255)
gTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACAtccc > 2:116055/1‑147 (MQ=255)
gTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACAt > 1:903587/1‑146 (MQ=255)
aaaCTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGCCAtctc > 1:396397/1‑146 (MQ=255)
aaaCTTCCACACCGCGCGCATCAGCCCCAGGTTGCCCTCTTCGATCAGTGCCAGCAACGCCAGCCCACGTGTGCCATATCGGCGGGCAATTTTTACCATCAGACGCAAGTTACTCTCGAACCTCCGGCGGCGAGAGGCGACATCTCCAc < 2:856586/149‑1 (MQ=255)
aCTTCTCTACCGCGCGGATCAGCCCCACGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCa < 1:927530/146‑1 (MQ=255)
cTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCa < 2:761408/149‑1 (MQ=255)
ctACCGCGCGGATCAGTCCCAGGTTGCCCACTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACGAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgcg > 2:1127000/1‑149 (MQ=255)
aCCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCCGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGcgcg < 2:1177111/149‑1 (MQ=255)
aCCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTgc < 1:377768/146‑1 (MQ=255)
ccGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGa > 2:1549555/1‑149 (MQ=255)
gcgcgGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAATTTACTCTCGAACATCCGGCGGCGAAAGGCGACATCTCCACGCAGTGCGCGAcg > 2:792974/1‑149 (MQ=255)
gcgcgGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGCCATCTCCACGCAGTGcgcg > 1:1631302/1‑146 (MQ=255)
cgcgGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACCTCCGGCGGCGGGAGGCGACATCTCCACGCAGTGCGCGa > 1:716372/1‑146 (MQ=255)
ggATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCCACGCCAGACCACGATTGTCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAcgc < 1:1448834/146‑1 (MQ=255)
aTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAACTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACgcgc > 1:1181573/1‑146 (MQ=255)
aTCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAAATTTTACCACCAGACGCAAGCTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAccggc > 1:22991/1‑142 (MQ=255)
aTCAGCCCCAGGTTGCCCTCTTCGAGAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaa < 2:252735/149‑1 (MQ=255)
ccccAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCaaaac > 1:834733/1‑145 (MQ=255)
ccccAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATaaa < 2:1667584/149‑1 (MQ=255)
ccAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCCGTGCGCGACGCGCaaactaaact > 2:677512/1‑149 (MQ=255)
cAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATACCGGCGGGCAATTTTTACCACCAGACGCATGTTACTCTCGAACATCCGGCGGCTAGAGGCGACATCTCTTCTCAGTGTGCGACGCGTAAAATaaa < 1:445465/146‑1 (MQ=255)
cAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATaaa < 1:1451104/146‑1 (MQ=255)
cAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATaaa < 1:289384/146‑1 (MQ=255)
aGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCACTTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGTCATCTCCACGCAGTGCGCGACGCGCAAAATAAActtc < 2:1151463/149‑1 (MQ=255)
aGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAActtc < 2:756129/149‑1 (MQ=255)
aGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAActtc < 2:1775237/149‑1 (MQ=255)
ttGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGACCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAActtc < 1:48529/146‑1 (MQ=255)
ttGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCGCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAActtc < 1:49874/146‑1 (MQ=255)
tctTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGc > 2:816375/1‑149 (MQ=255)
ctTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCg < 1:313650/146‑1 (MQ=255)
cGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGtt > 2:1434631/1‑149 (MQ=255)
cGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGtt < 2:1446816/149‑1 (MQ=255)
gATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCg < 1:1346800/146‑1 (MQ=255)
gATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGAGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAACATAAACTTCTTCTTCGGCCg > 1:1190553/1‑146 (MQ=255)
ggTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgt > 2:1441870/1‑149 (MQ=255)
gcccaccaACGCCAGCCCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgtg < 2:619118/147‑1 (MQ=255)
tCCAGCAACGCCATACCACGATTGACATCACGGCGGGCACTTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgtgg < 2:117726/149‑1 (MQ=255)
ccAGCAACGCCAGCCCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgtggt < 2:1016598/149‑1 (MQ=255)
ccAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGCCACAAATAACACTCCGACAACCTGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATCAACTTCTTCTTCGGCCGTTAACAgtggt < 2:953253/149‑1 (MQ=255)
ccAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgtggt < 2:552441/149‑1 (MQ=255)
ccAGCAACGCCACACCCCGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAATCTTCTTCTTCGGCCGTTAACAgtggt < 2:1552107/149‑1 (MQ=255)
cAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAggg > 1:1558562/1‑144 (MQ=255)
aGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGGCGCGCAAAATAAACTTCTTCTTCGGCCGTTAACGCTGGTGa > 2:213708/1‑149 (MQ=255)
aGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCGTCTTCGGCCGTTAACAGTGGTGa < 2:958165/149‑1 (MQ=255)
gCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgtggt < 1:656812/146‑1 (MQ=255)
gCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgtggt > 1:1660985/1‑146 (MQ=255)
gCAACGCCAGACCACGATTCCCATAGCGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAgtggt < 1:1051061/146‑1 (MQ=255)
aCGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGaa < 1:280415/146‑1 (MQ=255)
cGCCAGACCACGTTTGCCATAGCGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACGTCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAAt < 1:1163775/146‑1 (MQ=255)
cAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCaa > 2:1443181/1‑149 (MQ=255)
cACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCa < 2:359311/149‑1 (MQ=255)
cACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCCCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCa < 2:359253/149‑1 (MQ=255)
aCGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCACCAAAAACTTCTTCTTCGGCCGTTCACAGTGGGGAATAAcacaccc > 1:1288357/1‑140 (MQ=255)
gATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGATACTCTCGAACATACGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACACGCAAAAGAAACTGCTGCTTCGGCCGTTAACAGTGGTGAATAACCAAACTCa > 1:581776/1‑146 (MQ=255)
ttGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGACGTAAACAGTGGTGAATACCCAAtcctacc < 1:1384325/146‑6 (MQ=255)
gCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCCAACATCCGGCGGCGAGAGGCGCCCTCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCaa < 1:1471342/146‑1 (MQ=255)
ccATACCGGCGGGCAATTTTTACCACCCGCCGCAAGTTACGCTCGAACATCCGGCGGCGATAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAg < 1:1539795/146‑1 (MQ=255)
ccAGAACCGCGTGCAATTTTTACCACCAGACCCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAg < 1:1486890/146‑1 (MQ=255)
cATAACGGCTGGCAATTTTTACCACCAGACGCAAGTTACTCACGAACACCCGCCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAgg < 1:583277/146‑1 (MQ=255)
cATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACACTCGAACATACGGCGGAGAGAGGCGACATCTCCAAGCAGTGCGCGACGCGCAAAATAAACTTCTTATTCGGCCGGTAACAGTGGTGAATAACCAATATCACCaacg > 1:770261/1‑144 (MQ=255)
cATAACGGCGGGCAATTTTTACCACCAGAAGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCGTCTTCGGCCGTTAACAGTGGTGAAGAACCAATCTCACCAAGGTaa > 2:1251450/1‑149 (MQ=255)
aTAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGATGCGACATCTCCACGCAGTGCGCGATGCGCAAAATAAACTTCTTCTTCGGCGGTTAACAGTGGTGAATAACCAATCTCACCAAGGTaaa < 2:1153335/149‑1 (MQ=255)
aTAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTaaa < 2:1690482/149‑1 (MQ=255)
tAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGACTAACCAATCTCACCAAGGTAAAg > 2:925716/1‑149 (MQ=255)
aCGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTaaa < 1:1023403/146‑1 (MQ=255)
cggcggGCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTATTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTg > 2:608347/1‑149 (MQ=255)
gCAATTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTcgc > 2:53669/1‑149 (MQ=255)
aaTTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGCCGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACAAAGGTAAAGCTGCGTcg > 1:619211/1‑146 (MQ=255)
aTTTTTACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTc < 2:1553270/149‑1 (MQ=255)
tttttACCACCAGCCGCCAGGTACTCTCGAACATCCGGCGCGGGGTGGCGACCTATACTCCCAGTTCACGACGCGCAAGATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTcgcg > 1:1160797/1‑146 (MQ=255)
tttttACCACCAGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGCGTCGCGTcc > 2:1049823/1‑149 (MQ=255)
ccccccgACGCAAGTTACTCTCGAACCTCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAacaca < 2:705981/143‑1 (MQ=255)
ccaccaGCCGCCAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAacaca < 2:268475/149‑1 (MQ=255)
ccaccaGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTTCAac > 1:977711/1‑146 (MQ=255)
accaGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACg > 2:1484731/1‑149 (MQ=255)
ccaGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAacaca < 1:1338487/146‑1 (MQ=255)
ccaGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAacaca > 1:106514/1‑146 (MQ=255)
aGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACg > 1:1034571/1‑146 (MQ=255)
aGACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtg > 2:587110/1‑149 (MQ=255)
gccGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgt < 2:1691721/147‑1 (MQ=255)
gACGCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgt < 2:1691124/149‑1 (MQ=255)
cGCAAGTTACTCTCGAACAGCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGGGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCtgtgt < 2:1480044/149‑1 (MQ=255)
gCAAGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAATCGCATCCAACACACGCtgtgtg > 2:94953/1‑149 (MQ=255)
cAAGTTACTCTCGAACCTCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTgg < 2:1278989/149‑1 (MQ=255)
aGTTACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCt > 2:728380/1‑149 (MQ=255)
tACTCTCGAACATCCGGCGGCGAGAGGCGACATCTCCACGAAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCt < 1:744448/146‑1 (MQ=255)
ctctCGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGAGAATAACCAATCTCACCAAGGTAAAACGGAGTGGCGTCCAACACACGCTGTGTGGCTCCCTg > 2:1206680/1‑149 (MQ=255)
tctcGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTGCTTCGGCCGTTAACAGTGGTGAATAACCAATCGCACCCAGTGAAAGCTGAGTCGCGTCCAACACACCCTGTGTGGCTccc > 1:1271460/1‑146 (MQ=255)
tcGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAAGACACGCTGTGTGGCTCCCTg > 1:737894/1‑146 (MQ=255)
tcGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGa < 2:448220/149‑1 (MQ=255)
cGAACATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGAAGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACACCTCACACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGGGAt > 2:413442/1‑149 (MQ=255)
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AAGCGGAAACCACGTTCCGGGTCAAACTTCTCTACCGCGCGGATCAGCCCCAGGTTGCCCTCTTCGATAAGGTCCAGCAACGCCAGACCACGATTGCCATAACGGCGGGCAATTTTTACCACCAGACGCAAGTTACTCTCGATCATCCGGCGGCGAGAGGCGACATCTCCACGCAGTGCGCGACGCGCAAAATAAACTTCTTCTTCGGCCGTTAACAGTGGTGAATAACCAATCTCACCAAGGTAAAGCTGAGTCGCGTCCAACACACGCTGTGTGGCTCCCTGCGAT > CP009273/2860486‑2860773
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
