Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A15 F18 I0 R1
|
55 |
72.5 |
2455354 |
98.2% |
2411157 |
146.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,029,079 |
C→T |
39.9% |
A188T (GCT→ACT) |
prfB ← |
peptide chain release factor RF‑2 |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,029,079 | 0 | C | T | 39.9%
| 68.8
/ 103.9
| 113 | A188T (GCT→ACT) | prfB | peptide chain release factor RF‑2 |
| Reads supporting (aligned to +/- strand): ref base C (35/32); new base T (25/19); total (60/53) |
| Fisher's exact test for biased strand distribution p-value = 6.99e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.88e-01 |
Only 100 of 115 total aligned reads displayed.
GCCGGGTTGATTTCGATATCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGT > CP009273/3028931‑3029226
|
gccgGGTTGATTTCGATATCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGc < 1:401792/149‑1 (MQ=255)
gccgGGTGGATTTCGATATCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGc < 1:383278/149‑1 (MQ=255)
tGATTTCGATATCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTTTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCCGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCg > 1:661098/1‑149 (MQ=255)
aTTTCGATATCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGcc < 1:702374/149‑1 (MQ=255)
aTTTCGATATCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGcc < 1:1244857/149‑1 (MQ=255)
tttCGATATCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCg > 1:82457/1‑149 (MQ=255)
tttCGATATCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTGCTGTACGCAGCGAGCCGGAAGTGTAATCGCCg > 1:645780/1‑149 (MQ=255)
tttCGATAGCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCg < 1:1013161/149‑1 (MQ=255)
gATATCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGgaga > 1:289498/1‑149 (MQ=255)
gATATCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACACACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGgaga > 1:1144649/1‑149 (MQ=255)
atatcaatatcaTCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTGAGCGTAATCGCCGGAGAt > 1:1266560/1‑149 (MQ=255)
atatcaatatcaTCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGAt > 1:1151460/1‑149 (MQ=255)
atcaatatcaTCATCAACTTCCGGATAAACAAACGCGGGGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGATTCTGTAGGCCGCCGGCCGTCAGTGGAACCGCCGGAGAgtt > 1:563762/1‑149 (MQ=255)
atcaatatcaTCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCGGCCGTAAGCGTAATCGCCgg > 2:1133881/1‑143 (MQ=255)
atcaatatcaTCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCACCCGTAAGTGTAATCGCCGGAGAttt < 1:777358/149‑1 (MQ=255)
tcaatatcaTCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGAtttt > 1:1099150/1‑149 (MQ=255)
gcaatatcaTCATCAATTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGAtttt < 1:94147/148‑1 (MQ=255)
atatcaTCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGCCGGTCATCGTTGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGAt < 1:303174/149‑1 (MQ=255)
atatcaTCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGCCCCCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGAt < 1:1225067/149‑1 (MQ=255)
tcatcatcaACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGAtttt > 2:107802/1‑143 (MQ=255)
tcatcatcaACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAAACGCCGGAGATTTTGATCGt > 1:1102309/1‑149 (MQ=255)
catcatcaACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATAGCCGGAGATTTTg > 2:380305/1‑143 (MQ=255)
attatcaACTTCGGGATAAGCCAACGCGGGGCGGAACGACGGGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCa < 1:45228/146‑1 (MQ=255)
tcatcaACTTCCGGATAAACAACCGCGGAGCCGAACGACGTGGGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCAc < 1:354033/149‑1 (MQ=255)
tcatcaACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTGGGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGAt < 2:1051923/143‑1 (MQ=255)
tcatcaACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGAt > 2:896182/1‑143 (MQ=255)
tcaACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGGGTCAAACGGGCATTTACGCACCCGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTCAGCGTAATCGCCGGAACTTTTGacact > 2:283353/1‑139 (MQ=255)
tcaACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTCAGCGTACTCGCCGGCGATTTTGAACGt > 2:923300/1‑143 (MQ=255)
tcaACTTCAGGATAAACCAACGCGGCGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGa < 1:1083028/149‑1 (MQ=255)
caACGTCCGGATAAACAAACGCGTGGCTGAACGACGTGTGGCCACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTc < 2:1000977/143‑1 (MQ=255)
caCTTCCGGATAAACAAACCCCGAGCTGAACGACGTGCGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGTACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGAtt < 1:39488/148‑1 (MQ=255)
ttCCGGATAAACAAACGCTGCGCTGAACGACGTGTGGCGAAGCCCGCCGTATTCAACCGGGAGTCTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTaa > 1:954141/1‑149 (MQ=255)
cGGATAAACACACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATAc < 1:855496/149‑1 (MQ=255)
aTAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTGACGGGtttca > 2:388289/1‑141 (MQ=255)
aTAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGGCAAACGGGCTTTCACGCACTAGGCTTTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCg > 1:890632/1‑149 (MQ=255)
tAAACAACCGCGGAGCTGAACGACGTGTGGCGACGTCCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTCTCATCGTCACGGATTTAATACCCGc < 1:726846/149‑1 (MQ=255)
aaacaaacGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAGGTGTAATCGCCGGAGATTTTGATCGCCACGGATTTAATACCCGcc > 1:461451/1‑149 (MQ=255)
caaacGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACGCGGCGGTGAGCGCCGGTTTGTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATAccc > 2:63715/1‑143 (MQ=255)
caaacGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAAATTTTGAACGTCACGGATTTAATAacc > 2:1031199/1‑143 (MQ=255)
aaacGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGGCCGGCGTTAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTACTACCCGCCACtt > 1:301942/1‑149 (MQ=255)
cgGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCt > 1:1276361/1‑149 (MQ=255)
gCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCAGGCACTTCAc > 2:6976/1‑143 (MQ=255)
cTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCGGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTACTCGCCGGACATTTGGATCGTCCCGGATTTCAAACACGCGACTTCAcc > 2:491560/1‑143 (MQ=255)
cTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGGCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAACAGCCGGAGATCTTGCTCGTCACGGACTTAATACTCACCACAACAcc > 2:721324/1‑143 (MQ=255)
tGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAAACGCCGGAGATTTTGATCGTCACGGAATTAATACCCGCCCCTTCACCTTCCGAc > 1:820628/1‑149 (MQ=255)
ggAACGCGGTGTGGCGCCGACCGGCGGAGTCAAACGGGCTTTTACGCCCCAGGCGGTGACCGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGAc < 1:397847/148‑1 (MQ=255)
aaCGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACAGGGCGGGGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGGTCGTCACGGATTTAATACCCGCCACTTCACCTTc > 2:857866/1‑143 (MQ=255)
aaCGACGGGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCCGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTc < 2:588901/143‑1 (MQ=255)
cgacgTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCtt > 1:615541/1‑149 (MQ=255)
gCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGAttt > 1:55216/1‑149 (MQ=255)
ggcctcccgccgGAGTCAACCGGGCTTTTACGCCCCAGGGGGTGAACGCCGGTTTCTGTACCCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGACCGTACAAGAGTTAATACCCGCCACTTCACCTTCCGACTCTTCgat < 2:194338/137‑1 (MQ=255)
gacgacCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTGCTGTACGCAGCCAGCCGGAAGCGTAATCGCCGGAGATTTTGATCGGCCCGGATTTAATACCCGCCACTTCACCTGCCGACTCCTCgatg > 2:745158/1‑143 (MQ=255)
gacCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTGCTGTACACAGCGAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCCCTTCACCTTCCGACTCTTCCattatt > 2:744322/1‑143 (MQ=255)
ccgccgGTGTCAAACGGGCTTGTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGtttt < 1:936921/149‑1 (MQ=255)
cgccgGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTg > 1:858594/1‑149 (MQ=255)
cgGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGaaa < 1:731499/149‑1 (MQ=255)
tCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACTCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCAcg < 1:244452/149‑1 (MQ=255)
aagcGGGCTTTTACGCTGCAGGCGGTGAACGCCGGGTTCTGTACGCAGCCAGCCGTGAGCGTAATCGCCGGGGTGTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGGTGATTTCAGTGTTGAAAc > 2:727321/4‑143 (MQ=255)
aaaCGGGCTTTTACGCACCAGGGGGTGAACGCCGGTTTCTGTAGGCAGCCAGCCGTAAGCGGAATCGCCGGAGAGTTTGATCGTGCCGGATTTAATACCCGCCACTGCACCTTCCGACTCTTCGCTGATTTCAGTTTTGaacc > 2:392768/1‑141 (MQ=255)
aaaCGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCAGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAAc > 2:978465/1‑143 (MQ=255)
aaaCGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCAcgcg > 1:1086205/1‑149 (MQ=255)
aaCGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCCACTCTTAGATGATTTCAGATTTGAAACAACCCGa > 1:449169/1‑149 (MQ=255)
ggCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCt < 1:1168659/149‑1 (MQ=255)
ttttACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGcc > 1:772494/1‑149 (MQ=255)
ttACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTc < 2:967111/143‑1 (MQ=255)
ttACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCa < 1:320823/149‑1 (MQ=255)
caCGCACCAGGCGGTGAACGCCCGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGCCACGGATTTAACACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAg < 1:280357/148‑1 (MQ=255)
gCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCAGGAGAGTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAgcgc > 1:1222123/1‑149 (MQ=255)
cgccAGGCGGTGAACGCCGGGTCGTGTGCGCGCCCAGCCGTAAGTGTACTCGCCGGAGATTTGGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGccc < 2:415728/141‑1 (MQ=255)
cACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCa < 1:1289898/149‑1 (MQ=255)
aCCCGGCCGTGAACGCCGGTTTCTGTACGCAGCAAGCCGTAAGGGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAg < 1:356984/149‑1 (MQ=255)
aCCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGAAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTATTCGATGAATTCGGTTTTCAAACAACACGATTCTGCCCa > 2:315514/1‑143 (MQ=255)
ccAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAg > 2:502820/1‑143 (MQ=255)
ccggCGGTGGACGCCGGTTTCTGTACGCGGCCAGCCGTAAGTGTAAGCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGat < 1:125103/147‑1 (MQ=255)
gCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCa > 2:1096021/1‑143 (MQ=255)
gCGGTGAACGCCGGTTTCGGTGCGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGAGATACTGcacacagca < 2:438871/143‑6 (MQ=255)
tGAACGCCGGTTTCTGTCCGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTTACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACg < 1:675690/149‑1 (MQ=255)
aaCGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCt < 1:119796/149‑1 (MQ=255)
cGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGCTGATTTCAGTTTTGAAACCACCGGCTTCTGACCAGCGCAggcacaga > 2:1082236/1‑136 (MQ=255)
cGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCa > 1:765227/1‑149 (MQ=255)
gCCGGTTTCTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCaa > 1:1181399/1‑149 (MQ=255)
cccGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCaa < 1:42591/148‑1 (MQ=255)
ccGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAg < 1:1066833/149‑1 (MQ=255)
cGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCCCCGGAGATTTTGATCGTCACGGATTTAATCCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGc < 2:384149/143‑1 (MQ=255)
tttCTGTACGCAGCCGGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCCCTTCACCTTCCGACGCTTCGATGATTTCGGTTTTGACACCACGCGATTCTGCCCAGCGCAGATTCATACGCTCAAGCATg > 1:198974/1‑149 (MQ=255)
ttCTGTGCGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTCCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCaa < 2:1014465/143‑1 (MQ=255)
ttCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGCGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGc > 1:634482/1‑149 (MQ=255)
cTGTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGGGTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTc > 1:898334/1‑149 (MQ=255)
ggTACGCAGCCAGCCGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCCCTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACCTACGCTCAAACa > 2:887196/2‑143 (MQ=255)
gaCGCAGCCCGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCGAGCGCAGATACATACGCTCAAGCATGCTCGcc < 1:637061/148‑1 (MQ=255)
aCGCAGCCAGCCGTAAGTGTAATAGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGAGTTCAGTTTTGAATCCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGc > 2:777757/1‑143 (MQ=255)
gCAGCCAGCCGTAAGCGCAATCGCCAGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTAAACAGCATAGATACATACGCTCAAGCATGCTc < 2:565999/143‑1 (MQ=255)
cagccaacCGTAAGTTTAATCCCCGCAGATTTCGACCCCAACGGATTTAACACCCGCCACTTCACCTCCCGACCCTTCCACGATTTCAGTTTTGAAACCACGCGATTCTGCCCAACGCAAATACATACGCTCAAGCATGCTCg < 2:164737/143‑1 (MQ=255)
ccagccGTAAGGGTAATCGCCGGAGATTTTTATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCt < 1:295175/149‑1 (MQ=255)
cagccGTAAGTGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCa < 2:501035/143‑1 (MQ=255)
gccGTAAGCGTAATCGCCGGAGATTTTGGTCGTCACGGTTTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCtgtg < 1:564678/149‑1 (MQ=255)
gTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCTCCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCt < 2:882926/143‑1 (MQ=255)
tAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCCGGCCtg > 2:328788/1‑143 (MQ=255)
aaGCGTAATCGCCGTAGATTTGGATCGTCACGGAGTTAACACCCGCCACCTCTCCTTCCGCTTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCtgt < 2:608973/143‑1 (MQ=255)
gCGTAATCGCCGGCGATTTTGATCGTCACGGATTTAATCCCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGt < 1:1058866/149‑1 (MQ=255)
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GCCGGGTTGATTTCGATATCAATATCATCATCAACTTCCGGATAAACAAACGCGGAGCTGAACGACGTGTGGCGACGACCGCCGGAGTCAAACGGGCTTTTACGCACCAGGCGGTGAACGCCGGTTTCTGTACGCAGCCAGCCGTAAGCGTAATCGCCGGAGATTTTGATCGTCACGGATTTAATACCCGCCACTTCACCTTCCGACTCTTCGATGATTTCAGTTTTGAAACCACGCGATTCTGCCCAGCGCAGATACATACGCTCAAGCATGCTCGCCCAGTCCTGTGCTTCCGT > CP009273/3028931‑3029226
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
