Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F20 I0 R1
|
52 |
51.1 |
1736300 |
96.9% |
1682474 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,718,678 |
C→G |
38.3% |
G143A (GGC→GCC) |
kgtP ← |
alpha‑ketoglutarate transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,718,678 | 0 | C | G | 38.3%
| 51.8
/ 75.7
| 68 | G143A (GGC→GCC) | kgtP | alpha‑ketoglutarate transporter |
| Reads supporting (aligned to +/- strand): ref base C (23/19); new base G (11/15); total (34/34) |
| Fisher's exact test for biased strand distribution p-value = 4.54e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.02e-01 |
GTGCAGCGTCTTCCATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGAT > CP009273/2718532‑2718824
|
gTGCAGCGTCTTCCATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCa < 1:590411/149‑1 (MQ=255)
tGCAGCGTCTTCCATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCat > 2:389091/1‑149 (MQ=255)
tCCATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGcc > 2:284213/1‑149 (MQ=255)
cATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGAAACTTCACACAGATAGGTGGCGCTGGTGCCATATTCTCCGCCaa > 2:807711/1‑149 (MQ=255)
aTGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAAc > 1:375760/1‑149 (MQ=255)
tgtgtTGTAAAACTCCGACATCCATTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGAt < 1:782749/149‑1 (MQ=255)
tgttgtAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATGGGTGGCGCTGGTGGCGTATTCTGCGCCAACAGATaa > 2:151018/1‑149 (MQ=255)
tgttgtAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATaa > 2:30447/1‑149 (MQ=255)
aCCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGaaa > 2:835822/1‑149 (MQ=255)
cAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAAcga < 2:856313/149‑1 (MQ=255)
cAACCAGTAGGGCTAGCAGTTGTCAGCAGCTCAAATCCTCATACTGACATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACGGACCATCCCTGAAATAAAcga > 1:189085/1‑149 (MQ=255)
cAACCAGTAGGGCGAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAAcga < 1:25681/149‑1 (MQ=255)
aaCCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAAcgag < 2:515032/149‑1 (MQ=255)
tAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGaa > 2:768433/1‑149 (MQ=255)
gCTAGCAGTTGGCCGCCGATCAACGTTACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCaa < 2:383580/149‑1 (MQ=255)
cTAGCAGTTGTCCGCCGCTCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGCCGCCGCTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCaat < 2:678187/149‑1 (MQ=255)
cTAGCAGTTGTCCGCCGATCAACGGCACATACGGAAATGATGCGTAAACACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGATCGCGCTGGTGCCATATTCTCCGCCCACAGGAAACCCCTGAAAGAAACGAGCGAGAAGCcat > 1:294444/1‑149 (MQ=255)
ccagtgccccgccgATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCaataat < 1:710546/141‑1 (MQ=255)
ttGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCg > 1:42848/1‑149 (MQ=255)
tCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTCCCATATACGCCGCCAACAGAAAATCCGCGAAAGAAACGGGCGAGAAGCAATAAGGCCGGaa > 1:94799/1‑148 (MQ=255)
cgccgATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGcc < 1:284213/149‑1 (MQ=255)
cgccgATCAAACTCACACATTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCAGATAGGTGGCGCTAGTTCCATATTCTCCGCCAACAGATCCCCCCTGAAATAACCGCCCGAGAAGCAATAATGACGGAGcc < 1:239447/149‑1 (MQ=255)
gccgATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCCACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAACCCCTGCAATAAACGAGCGCGAAGCaagaacacccgcgccc > 1:759821/1‑138 (MQ=255)
ccgATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCGGAAATAAACGAGCAAGAAGGATTGATGCCGGGACCCa > 2:235986/1‑149 (MQ=255)
tCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTa < 1:643391/149‑1 (MQ=255)
gcAACGTCACATACTGAACTGATGCGTAAAAACCGTTGCGCCCTTCAACGGCAACTACACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTa < 1:502946/148‑1 (MQ=255)
cAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTAc < 1:706818/149‑1 (MQ=255)
cAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGAAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTAc < 2:715670/149‑1 (MQ=255)
gTCACATACGCGAATGATGCGTAAGAACCTTCGCGCCCTTCCACGGCAACCTCGCTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGTTAATCCCTGAAATCAACGCGCGAGAAGCAATAATGCCGGAGCCCACGTACCtat < 1:362557/149‑1 (MQ=255)
cacaTACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAg > 2:359689/1‑149 (MQ=255)
caTACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAGTGTCGGAGCCCACGTACCTATAGtt > 2:6044/1‑149 (MQ=255)
tACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATAGAGGTGGCGCTGGTGCCATCTTCTCCGCCAACAGAAAATCCCTGAAATAAACGAGCGACAAGCACTAAACCCGTAGCCCACCTAcgactcgagtc > 1:848053/1‑139 (MQ=255)
gAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATaa > 2:141902/1‑149 (MQ=255)
tgatgCGTAAAACCCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGAGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAACCGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTg > 1:685647/1‑149 (MQ=255)
tgatgCATAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACCGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTg < 2:207529/149‑1 (MQ=255)
tgCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGa < 1:277363/149‑1 (MQ=255)
aaacCCTTTTCTCCCTTCAACGGCAACGTCACTCATATAGGTGGCGGTGGTGCCATATTCTCCGCCAACAGATAACCCCTGAAATAAACGAGCCAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTCGGaggcagg < 2:404413/149‑1 (MQ=255)
aaaaCCTTTGCTCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGATTCATAACCTGGGaggcagg > 1:407069/1‑149 (MQ=255)
aaaaCCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGaggcagg > 2:616020/1‑149 (MQ=255)
aaaaCCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCAAGTACCTATAGTTTCATGACCTGGGaggaagg > 1:372095/1‑149 (MQ=255)
aaaaCCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCCGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGaggcagg < 2:825224/149‑1 (MQ=255)
cTTTGCGCCCTTCAACGGCAACTTCACTCATATCGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATa > 2:635110/1‑149 (MQ=255)
cTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATa > 2:651662/1‑149 (MQ=255)
gcgcCCTTCAACGGCAACTTCACTCATATAGGCGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATACTGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCa < 1:477134/149‑1 (MQ=255)
cgcCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCTGACAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAg < 2:849828/149‑1 (MQ=255)
cgcCCTTCAACCGCAACTTCACTCATTTAGGCGGCGCTGGCGCCATATTCCCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAg < 2:375760/149‑1 (MQ=255)
gcCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAACAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGc > 2:253682/1‑149 (MQ=255)
gcCCTTCAACGGCAACTTCACTCATATAGGTGGCGCGGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGc < 2:54558/149‑1 (MQ=255)
ccccTTCAACGGCAACTTCTCTCATATAGGTGGCTCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGc < 1:318840/148‑1 (MQ=255)
ccTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGGGCGCGAGGAATCCGTTCCCGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGa > 2:850707/1‑149 (MQ=255)
ccTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGa > 2:44767/1‑149 (MQ=255)
tCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATcc > 1:288505/1‑149 (MQ=255)
tCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGCGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATcc < 1:491572/149‑1 (MQ=255)
cGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGaaa < 2:394020/149‑1 (MQ=255)
cGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTACGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGGTCCGaaa > 1:408435/1‑149 (MQ=255)
gCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAaca < 1:332746/149‑1 (MQ=255)
aaCTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAAcaca < 2:77486/149‑1 (MQ=255)
aCTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATACCCCGCCAGTCAGGCGATAACCAGCGATCCGAAACAcat < 1:835822/149‑1 (MQ=255)
cTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGAGCCGAAACAcatc > 2:653883/1‑149 (MQ=255)
tCACGCATATAGGTGGCGCGGGTGGCATAGTCTCCGCCAACAGATAACCTCTGAAAGAAACGTGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATTACCAGCGATCCGAAACAcatcat < 1:596145/149‑1 (MQ=255)
aCTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATac > 2:52442/1‑149 (MQ=255)
tCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATacac > 2:695954/1‑149 (MQ=255)
ataGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCg < 2:186410/149‑1 (MQ=255)
ataGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCg < 2:42848/149‑1 (MQ=255)
ggCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGGGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGAACCGAAACACATAATAGAACCCGATaaaa > 1:281899/1‑147 (MQ=255)
ggCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACa < 2:258486/149‑1 (MQ=255)
ggCGCTGGTGCCAGATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACa < 1:348676/149‑1 (MQ=255)
tGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGAt > 1:311533/1‑149 (MQ=255)
|
GTGCAGCGTCTTCCATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACACCGATAACAGCATCGAT > CP009273/2718532‑2718824
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
