Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F20 I40 R1
|
12 |
45.4 |
1473824 |
96.3% |
1419292 |
148.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP009273 |
2,718,678 |
C→G |
G143A (GGC→GCC) |
kgtP ← |
alpha‑ketoglutarate transporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,718,678 | 0 | C | G | 100.0%
| 109.4
/ NA
| 36 | G143A (GGC→GCC) | kgtP | alpha‑ketoglutarate transporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base G (23/13); total (23/13) |
TTCCATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACAC > CP009273/2718542‑2718808
|
ttCCATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGGTGCATATTCTCGGc > 2:350483/1‑149 (MQ=255)
tgtgtTGTAAAGCCACGACAACCAGTATGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGAt < 1:683118/149‑1 (MQ=255)
tgtgtTGTAAAACCACGACAACCAGTAGGGCTAGCAGGTGGCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCCACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGAt > 2:723193/1‑149 (MQ=255)
ttgtAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCGGGGGGCATATTCTCGGCCAACAGATAATc > 1:615749/1‑149 (MQ=255)
aaaaCCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTg < 1:620950/149‑1 (MQ=255)
aaaCCACGACAACCAGTAGGGCTAGAAGATGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGa > 1:412429/1‑149 (MQ=255)
aCGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTGCGCCAGCAGATGATCGCTGAAATaa > 2:607197/1‑149 (MQ=255)
cGACAACCACTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGGAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATCCTCCGCCAACAGATAATCCCTGAAATaaa < 1:565716/149‑1 (MQ=255)
ccAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAAGCCCTGAAATAAAcgagcg > 2:355832/1‑149 (MQ=255)
aGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCAACCAGCTAATCCCTGAAATAAACGAGCGAGAAGCaagaa > 2:569336/1‑149 (MQ=255)
aGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGc < 2:399596/149‑1 (MQ=255)
ttGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAGTCCCTGAAATAAACGAGCGAGAAGCAATAATGCCg > 1:410220/1‑149 (MQ=255)
tCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCACTAATGCCgggg > 1:426934/1‑147 (MQ=255)
ccgATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCa > 2:289058/1‑149 (MQ=255)
gATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTGAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACg > 1:474805/1‑149 (MQ=255)
caTACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGtt > 1:77754/1‑149 (MQ=255)
tccTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTc < 1:623610/147‑1 (MQ=255)
gAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATaa > 2:661105/1‑149 (MQ=255)
ggatgCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAAGGCCGGAGCCCACGTACCTATAGTTTCATAACCTg < 2:541123/148‑1 (MQ=255)
gatgCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTgg < 1:426847/149‑1 (MQ=255)
atgCGTAAAAACCTTTGCGCCCTTCAACGGCCACTTCCCTCATCTAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTggg < 2:380527/149‑1 (MQ=255)
gTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGgggc > 1:30466/1‑149 (MQ=255)
tAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGaggca > 1:194041/1‑149 (MQ=255)
tAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGagcca > 1:194532/1‑149 (MQ=255)
cTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATa < 2:96348/149‑1 (MQ=255)
cgcCCTTCATCGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAg < 2:474814/149‑1 (MQ=255)
cgcCCTTCAACGGCAACTTCACTCATGTAGGGGGCGCTGGTGGCATATTCTCCGCCAACAGATAAGCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAg < 2:606115/149‑1 (MQ=255)
ttCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATACCCAGCGATc > 1:6151/1‑149 (MQ=255)
cGGCAACTTCACTCATATAGGTGGCGCGGGTCGCATATTCGCCGCCAACAGATAATCCCTTAAATACACGAGCGAGAAGCAATAATGCCGGAGCCCACGCACCTATAGTTGCTTAACCTGGGAGGCAGGCGATAACCAGCGATCCGaaa < 1:293962/149‑1 (MQ=255)
ttCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACAcatca > 2:671929/1‑149 (MQ=255)
ttCACTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACAcatca > 1:236871/1‑149 (MQ=255)
aCTCATATAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATac > 1:651685/1‑149 (MQ=255)
tCATGTAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGAAATAATGCCGGAGACCACGGGCCTGTAGTTTCCTAACCGGGGAGGCAGGCGATGACCAGCGATCCGAAAGACATCATacac > 2:111248/1‑149 (MQ=255)
atatAGGTGGCGCTGGTGGCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCAGAACCCGGGAGGCAGGCGATAACCAGGGATCCGAAACAAACCAAaaacac > 2:321731/1‑149 (MQ=255)
atatAGGTGGCGCTGGTGGCATATTCTCCCCCACCAGATCATCCCGTAAACATACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATacacac < 2:77754/149‑1 (MQ=255)
atatAGGTGGCGCCGGTGGCATATTCTCCGCCAACAGATAATCCCTAAAATAAACGAGCGAGAAGCAATAATACCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGCAACACACCATaccacc > 2:321727/1‑145 (MQ=255)
|
TTCCATGGTGTGTTGTAAAACCACGACAACCAGTAGGGCTAGCAGTTGTCCGCCGATCAACGTCACATACTGAAATGATGCGTAAAAACCTTTGCGCCCTTCAACGGCAACTTCACTCATATAGGTGGCGCTGGTGCCATATTCTCCGCCAACAGATAATCCCTGAAATAAACGAGCGAGAAGCAATAATGCCGGAGCCCACGTACCTATAGTTTCATAACCTGGGAGGCAGGCGATAACCAGCGATCCGAAACACATCATACACAC > CP009273/2718542‑2718808
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 8 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
