Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F20 I0 R1
|
52 |
51.1 |
1736300 |
96.9% |
1682474 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
2,811,405 |
A→G |
8.0% |
intergenic (‑186/+13) |
argQ ← / ← argZ |
tRNA‑Arg/tRNA‑Arg |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 2,811,405 | 0 | A | G | 8.0%
| 177.2
/ 6.6
| 73 | intergenic (‑186/+13) | argQ/argZ | tRNA‑Arg/tRNA‑Arg |
| Reads supporting (aligned to +/- strand): ref base A (40/27); new base G (2/4); total (42/31) |
| Fisher's exact test for biased strand distribution p-value = 3.91e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.78e-01 |
AGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGT > CP009273/2811264‑2811550
|
aGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCACCTCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGga < 2:722780/149‑1 (MQ=255)
tCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCAGTGCTGAAGATTTCGGAGAATATg > 1:656587/1‑149 (MQ=255)
tCAATTAAGAGATGGTGCATCCGGGAGGATTACTACCATTACGGCACGGCGTTGGGGAGGTAAATAAAGCGACCTTATCATCCCTT‑GTGCGTGGTGTTAGTTCCGCTACAACTTCGATACCTTCCTTGCTGAAGATTTCGGGGaagaag > 1:6069/1‑145 (MQ=12)
aaTTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACTTTCATTGCTGAAGATTTGGGAGAATATGGt > 1:601198/1‑149 (MQ=255)
aaTTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGt > 2:241282/1‑149 (MQ=255)
aaTTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTAGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGt > 2:579389/1‑149 (MQ=255)
ttAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTT‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGc > 2:269648/1‑149 (MQ=255)
ttAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGc > 2:184348/1‑149 (MQ=255)
ttAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGc > 2:240402/1‑149 (MQ=255)
ttAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTAGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGc > 2:598205/1‑149 (MQ=255)
aaGAGATGGTGCGTCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCAGCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGgagatggttttgcat < 1:149305/149‑12 (MQ=17)
aaGAGACGTGGCATCCGGGAGTCTTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATTCTACAAATGTG‑CTTCTTGTAATTCCGCTACCTTTTCGATGCCTTCATTGCTGAAGATTTCGGAGAATATGGTGCAt < 2:25527/149‑1 (MQ=12)
ggTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTTCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGGGAAGATGGTGCATCCGggag > 2:29674/1‑149 (MQ=255)
aTCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTc < 2:572652/149‑1 (MQ=255)
tCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑CTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAGGATTTCGGAGAATATGGTGCATCCGggagggctcg > 1:724387/1‑144 (MQ=255)
ccGGGAGGATTCCTCGCCTCGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGa < 2:827792/149‑1 (MQ=255)
ggaggaTTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAAcc < 2:526536/149‑1 (MQ=255)
acgaTTTCACGCCCTGCCGCTCGCCCTTCGGGCCGTTGCTAACGCAACGTTATCCTTCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTc < 1:118270/147‑1 (MQ=14)
ttACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGAc > 1:134848/1‑149 (MQ=255)
gCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCg > 1:579827/1‑149 (MQ=255)
ccctGCCGCTCGCCCTTCGGGCCGTTGCTAACGCAACGTTATCCTCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCgg < 1:281713/146‑1 (MQ=14)
ttGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGtt > 1:131636/1‑149 (MQ=255)
ctGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCTTTGCTGAAGATTTCGGAGAATAGGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGtt < 1:532772/148‑1 (MQ=255)
tGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCTTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTc < 2:70110/149‑1 (MQ=255)
tGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCCCGGTTc > 1:800722/1‑149 (MQ=255)
agCGACTCGCCCTTAAGAACGGTGCAAAAGCAACGTTATCATCCCTC‑GTGACTACGGTTAATTCCACTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGACCATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCGCGGTTc > 1:727167/2‑149 (MQ=17)
gCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCg < 2:697496/149‑1 (MQ=255)
gCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCg < 2:365224/149‑1 (MQ=255)
cGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCGTCCCTA‑GTGCCTGCGGTTGATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGt > 1:187820/1‑149 (MQ=255)
ggCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTa > 1:93394/1‑149 (MQ=255)
tCGGGCCGTTGCTAAAGCAACGGTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTGCCATCCCTTCATTGCCGAAGATTTCGGTGATGATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTAct < 2:248036/149‑1 (MQ=17)
tAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCGGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCGATCCAGCTGa > 1:484333/1‑149 (MQ=255)
tAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGa < 1:579389/149‑1 (MQ=255)
tAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGa < 1:241282/149‑1 (MQ=255)
aaaGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAg > 2:431312/1‑149 (MQ=255)
aaaGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAg > 2:87413/1‑149 (MQ=255)
accggtATCAGCCCTA‑GGGGCTGCGGTTAATTCCGCCACCTCTTCGATCCCTTCATTGCTGAAGATTTCGGCGAATAGGGTGCATCCGGGAGGATTCGAACCTCCGCCCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTggatagag < 1:41981/144‑8 (MQ=14)
catcCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATc > 2:247294/1‑149 (MQ=255)
atcCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGCGTCCTCTATCCAGCTGAGCTACGGATGCATCg > 1:425239/1‑149 (MQ=255)
atcCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGCGCTCCGGATGCATCg > 2:438306/1‑149 (MQ=255)
atcCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCg > 2:617314/1‑149 (MQ=255)
tcCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCgg > 2:244766/1‑149 (MQ=255)
cccTC‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATATCTTCATTGATGAAGATTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCggg < 2:593808/149‑1 (MQ=255)
cccTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCggg > 1:775829/1‑149 (MQ=255)
cccTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGCTCGTAGCCGAGGACTCTATCCAGCTGAGCGACGGAGGCAGCggg > 1:157418/1‑149 (MQ=14)
tA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGATCCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGaaa < 2:579827/149‑1 (MQ=255)
gCGGTTAATTCCGCTACCTCTTCGATACATTCATGGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGGCCGTAGCCGAGGACTCGATCCAGCTGAGCTACGGATGCATCGGGAAATTTAtttt > 1:298276/1‑149 (MQ=14)
gTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATttactttact > 2:8157/1‑149 (MQ=255)
ttAATTCCGCTCCCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTActg < 2:601198/149‑1 (MQ=255)
aaTTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTActgct > 1:81663/1‑149 (MQ=255)
tCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCCCTCGGTTCGTAGCCGAGAAAGATGACGTTCTGAGCTAAGGGTCCATCTGGAAATTGGTTTTACTGCTGat > 2:629091/1‑149 (MQ=14)
tggtcccttctCGATTCCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCAGGAAATTTATTTTACTGCTGatat < 2:646052/139‑1 (MQ=14)
cGCTATCTCTTCGATACCTTCATTGCTGAAGGTTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGatat > 1:164826/1‑149 (MQ=255)
cGCTATCTCTTCGATACCTTCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGatat < 1:126083/149‑1 (MQ=12)
gCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATAtt < 1:240402/149‑1 (MQ=255)
tACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCCCCGACCCCCCGGTTCGTAGCCGAGGCCTCAACCCCGCTGACCTACGAACGCATCGGGAAACATATTTTACTGCAGAAAttta > 1:220473/1‑147 (MQ=14)
ccTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATa < 2:278073/149‑1 (MQ=255)
tctTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACgg < 2:720182/110‑1 (MQ=35)
tctTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATGTTGATAct > 2:489171/1‑148 (MQ=255)
tctTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATAcc > 2:188114/1‑149 (MQ=255)
tggagaCCTTCATTGCGGAAGATTTCGGTGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGct < 2:405905/144‑1 (MQ=255)
tcgagcgctccATGGCTGAAGATTTCGGAGAATATGGGGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAACTTATTTTACTGCTGATATTGATACCGct < 2:59723/139‑1 (MQ=14)
ccTTCATTGCTGAAGGTTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTaaa < 2:164826/149‑1 (MQ=255)
ccTTCATGGCGTAAGGTTTCGGAGAATATGGTGCATCCGGGAGGATTCGACCCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTaaa < 2:504808/149‑1 (MQ=14)
ttCATTGCTGAAGGTTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAGTTTATTTTACTGCTGATATTGATACCg < 2:26352/139‑1 (MQ=255)
ttCATTGCTGAAGGTTACGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAGTTTATTTTACTGCTGATATTGATACCg > 1:26352/1‑139 (MQ=255)
ttCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGTGCCATAGTTTACTGCTGATATTGATACCGCTACTAAAGc < 2:425251/149‑1 (MQ=14)
tCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACg < 2:527854/97‑1 (MQ=38)
aTTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCat > 2:747736/1‑149 (MQ=255)
cTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTCAAGCCCTATCa > 2:134701/1‑149 (MQ=255)
tGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATGTTGATACCGCGACTAAAGCCATATCaa > 2:701915/1‑149 (MQ=255)
tGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCaa > 2:306332/1‑149 (MQ=255)
aaGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATGCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATGTTTATACCGCTACTAAAGCCCTCTCAAGt > 2:270616/1‑149 (MQ=14)
|
AGCCATATCAATTAAGAGATGGTGCATCCGGGAGGATTACTCGCCTTGCGGCTCGCCCTTCGGGCCGTTGCTAAAGCAACGTTATCATCCCTA‑GTGCCTGCGGTTAATTCCGCTACCTCTTCGATACCTTCATTGCTGAAGATTTCGGAGAATATGGTGCATCCGGGAGGATTCGAACCTCCGACCGCTCGGTTCGTAGCCGAGTACTCTATCCAGCTGAGCTACGGATGCATCGGGAAATTTATTTTACTGCTGATATTGATACCGCTACTAAAGCCATATCAAGT > CP009273/2811264‑2811550
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
