Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A16 F20 I0 R1
|
52 |
51.1 |
1736300 |
96.9% |
1682474 |
149.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP009273 |
3,787,229 |
T→C |
7.5% |
intergenic (‑186/‑118) |
yibB ← / → hldD |
YibB family protein, function unknown/ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP009273 | 3,787,229 | 0 | T | C | 7.5%
| 145.0
/ 2.9
| 54 | intergenic (‑186/‑118) | yibB/hldD | YibB family protein, function unknown/ADP‑L‑glycero‑D‑mannoheptose‑6‑epimerase, NAD(P)‑binding |
| Reads supporting (aligned to +/- strand): ref base T (24/25); new base C (2/2); total (27/27) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.60e-01 |
AAATATTAATAGAATGTATACTGTATATTATCCATTCAAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTT > CP009273/3787084‑3787376
|
aaaTATTAATAGAATGTATACTGTATATTATCCATTCAAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCa > 2:150312/1‑149 (MQ=255)
tAATAGAATGTATACTGTATATTATCCATTCAAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGc < 2:519807/149‑1 (MQ=255)
aaTGTATACTGTATATTATCCATTCAAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCtt > 2:798874/1‑149 (MQ=255)
aaTCTATAGTGTCTATTATCCATTCTAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCCACACCCGCCATGAAGGACTAGCTAAAACCCAACCTAGTTTGTTGCAATTAGCATCCtt < 2:168981/149‑1 (MQ=255)
tataCTGTATATTATCCATTCAAATGCTTCCGTTATTTATCATACATAGGAATATTGGTACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAACCTAGTTTGTGGCAATTAGAATCCTTGCAc > 2:37046/1‑149 (MQ=255)
taCTGTATATTATCCATTCAAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTCGCAATTAGCATCCTTGCACct > 2:472130/1‑149 (MQ=255)
taCTGTATATTATCCATTCAAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCAGCCATGAAGGACTAGCTAAAACCCAAACTAGTATGTTACAATTAACATCCTTacacgc > 1:196478/1‑147 (MQ=255)
taCTGTATATTATCCATTCAAATGCTTCCGTTAATTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTCGCAATTAGCATCCTTGCACct > 2:558814/1‑149 (MQ=255)
aCTGTATATTATCCATTCAAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACctc < 2:745299/149‑1 (MQ=255)
tataTTATCCATTCAAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCCCTATg > 2:86196/1‑149 (MQ=255)
ttatTCATTCAAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTaaa < 2:325413/149‑1 (MQ=255)
aTTCAAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCtc > 1:724051/1‑148 (MQ=255)
cctCCTTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTCTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTc < 1:69758/147‑1 (MQ=255)
tCCGTTATTTATCATACATCGGAATATTGATACTAAAGCGCTATTCACATGCAAAACCAACATCCGCAATGGAGGCCTAGCTAAAACCCAAACCAGTTGGTTCCAATTATCATCCTTGCACCCCTATGCAAAGGGCAGAAGGGAtcgcg > 1:219406/1‑145 (MQ=255)
tCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCgg < 2:444738/149‑1 (MQ=255)
ccGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGa < 2:687322/149‑1 (MQ=255)
ttatttagCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGAtgt < 1:93307/149‑1 (MQ=255)
atttatCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGAGATTCGGATGTGa < 1:604450/149‑1 (MQ=255)
aTACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGACGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGAAAAGGGCTGAAGCGATTCGCATGTGATGGTATg > 1:374931/1‑149 (MQ=255)
tACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCAATGTAAAGGGCTGAAGGGATTCGGATGGGATGGTAAGa > 2:688964/1‑149 (MQ=255)
cATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATAAAGGACTAGCGAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAATGGCTGAAGGGATGCGGATGTGATGGTATGAtt > 1:143612/1‑149 (MQ=255)
tCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTAc < 2:557540/149‑1 (MQ=255)
cGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACa > 2:446416/1‑149 (MQ=255)
aaTATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGAc > 2:626691/1‑149 (MQ=255)
tatTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACAt < 1:183597/149‑1 (MQ=255)
ccctgatccgacaGCACTATTCACATGCAAAACCAGCCTCCGCCATTAAGGACTCGCAAATATCTTTTTTAGTCTGTTGCAATTAGCATCCTTGCACCTCTATTTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACAt < 2:203286/137‑1 (MQ=255)
ttaaTACTAAATTACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACGAGTTTGTTGCAATCAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTc < 2:15150/146‑1 (MQ=255)
tACTAAAGCACTATTCACATGCAAAACCAACACCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCgtgt < 2:262228/149‑1 (MQ=255)
aCTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTc > 2:798195/1‑149 (MQ=255)
aGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTgaga > 2:212414/1‑149 (MQ=255)
cACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGAtt < 2:706855/149‑1 (MQ=255)
cTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGt < 1:472005/149‑1 (MQ=255)
tATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAGGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGtc < 1:731627/149‑1 (MQ=255)
tATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTCGCAATTAGCATCCTTGCACCTCTATGTAAAGTGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGtc < 1:558814/149‑1 (MQ=255)
tATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTCGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGtc < 1:472130/149‑1 (MQ=255)
tCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTGGTGTCTGAGATTGTgtct > 1:40011/1‑149 (MQ=255)
acaTGCAAAACCACCACCCGCCAGGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGa < 2:309697/149‑1 (MQ=255)
gCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACATACATTCGTTTCTGAGATTGTCTCTTACTcc > 2:261593/1‑149 (MQ=255)
cAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGCGATTGTCTCTGACTCCa > 2:634869/1‑149 (MQ=255)
aaCATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCg < 1:798195/149‑1 (MQ=255)
aTCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAg < 2:698490/149‑1 (MQ=255)
tCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAgg < 1:113927/149‑1 (MQ=255)
ccATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTAc > 2:37420/1‑149 (MQ=255)
aaGGACTAGCTAAAACACAAACTAGTTTGTTGCAATTAACATCCTTGCACCTCTATGTAAAGGGCTGAAGTGATTCGGTTGTGGTAGTATGCTTGCAGACATTGGTGGCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTa > 1:220317/1‑149 (MQ=255)
cTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGAGGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGatc < 2:751961/149‑1 (MQ=255)
gCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCCGCTCTCTAGAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGatcatc < 2:67086/149‑1 (MQ=255)
aaaaCCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGtt > 2:508715/1‑149 (MQ=255)
aCCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCGTCGTTAcc > 2:837772/1‑149 (MQ=255)
aCCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTAcc < 1:150312/149‑1 (MQ=255)
cccAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACcg > 2:334693/1‑149 (MQ=255)
cccAAACTAGTTTGTTACAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGGTGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACcg > 2:554523/1‑149 (MQ=255)
ccAAACTAGTTTGTTGCAATTAGCATCCTTACACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACcgg > 2:455592/1‑149 (MQ=255)
aaaCTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCAGCGTTACcggcg > 2:271795/1‑149 (MQ=255)
ccTAGTTGGGTGTAATTCGCATCCTTTCACCTCTGTGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCGCTGACTCCAGAATTCGAAGGTTACAGTTATGATCATCGTTACCggcggc < 1:818194/148‑1 (MQ=255)
tgtgttcCAATGAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCggg < 1:382756/147‑1 (MQ=255)
ctgCAATTAGCATCCTTGCGCCTCCATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCttt < 2:724051/148‑1 (MQ=255)
|
AAATATTAATAGAATGTATACTGTATATTATCCATTCAAATGCTTCCGTTATTTATCATACATCGGAATATTGATACTAAAGCACTATTCACATGCAAAACCAACATCCGCCATGAAGGACTAGCTAAAACCCAAACTAGTTTGTTGCAATTAGCATCCTTGCACCTCTATGTAAAGGGCTGAAGGGATTCGGATGTGATGGTATGATTACAGACATTCGTGTCTGAGATTGTCTCTGACTCCATAATTCGAAGGTTACAGTTATGATCATCGTTACCGGCGGCGCGGGCTTT > CP009273/3787084‑3787376
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
