Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A13 F20 I0 R1	91	60.0	1338914	94.3%	1262595	140.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	2,856,087	T→A	100%	P80P (CCT→CCA)	USA300HOU_2698 →	hypothetical protein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,856,087	0	T	A	100.0%	227.3 / ‑6.5	77	P80P (CCT→CCA)	USA300HOU_2698	hypothetical protein
Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (33/42); minor base G (0/1); total (34/43)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

ATGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCTAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTCAAATATTAATT  >  CP000730/2855953‑2856222

aTGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGt                                                                                                                                   <  1:506998/141‑1 (MQ=255)

     tGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCACCTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGACGTGTCATGCAATCATGCGCCAAAACGTcaaca                                                                                                                              >  1:445760/1‑141 (MQ=255)

     tGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGCTGTGTCATGCAATCATGCGCCAAAACGTcaaca                                                                                                                              >  2:352887/1‑141 (MQ=255)

      ggCGTCGGTCCTAAAGCTAGAGCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTcaacaa                                                                                                                             <  2:13117/141‑1 (MQ=255)

         cttGGTCCTCAAGCTTGAGCAATATTCGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGTAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATg                                                                                                                          <  2:152126/140‑1 (MQ=255)

          ttcgTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAATTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCAGGCGCCAAAACGTCAACAAATGa                                                                                                                         <  1:166704/138‑1 (MQ=255)

            ggTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATa                                                                                                                       <  2:203237/141‑1 (MQ=255)

             gTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGGGTCATGCAGACATGCGCCAAACCAGCAATAAATGATAg                                                                                                                      >  2:393942/1‑141 (MQ=255)

               ccTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGAt                                                                                                                    >  1:180750/1‑141 (MQ=255)

               ccTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATACAATCATGCGCCAAAACGTCACCAAATGATAGAt                                                                                                                    >  1:15163/1‑141 (MQ=255)

                  aaaGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGAtttt                                                                                                                 >  1:661116/1‑141 (MQ=255)

                     gCTATATCAATATTGGGACAAGCTTTATTTCAGCACCAACTACATTTTAAAGCGGAAGTTCAGTCCTCATTACCTTTTAAGTTAACACGAGATGTGTAATGCAAACATGCGCCAAAACGACAACAAACGAACGATTTtaca                                                                                                              >  2:527938/1‑139 (MQ=255)

                        atatCAATATTGGAACAAGCTTTATTTCAGCACCAACTACCTTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGACACCAACTGATCGATTTTATAgtt                                                                                                           >  1:502975/1‑141 (MQ=255)

                          atCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAgttgt                                                                                                         >  2:274517/1‑141 (MQ=255)

                          atCAATATTGGAACAAGCGTTATTTCAGCACCAACTACATTTTAGAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTTTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAgttgt                                                                                                         <  2:160998/141‑1 (MQ=255)

                           tCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAAAAGGAGATGTGTCATGCAATCATGCGCCAAAACGTAAACAAATGATAGATTTTATAgttgtt                                                                                                        >  2:260347/1‑141 (MQ=255)

                              atatTGGACCAAGCTTTATTTCAGCACCAACTACATTTTAATACGTAAGTTCATTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTAca                                                                                                     <  2:129548/141‑1 (MQ=255)

                              atatTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTAca                                                                                                     >  2:460663/1‑141 (MQ=255)

                               tatTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTAcag                                                                                                    <  1:131177/141‑1 (MQ=255)

                                atTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTAcagc                                                                                                   <  1:527098/141‑1 (MQ=255)

                                  tGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGCTCTTATAGTTGTTAcagcag                                                                                                 >  2:95228/1‑141 (MQ=255)

                                   ggaataacgattATTTCATCACCATATACATCTTAAAACGGAAGGTCAGTAAGAATTACCTGTACAGATAACTGTAGAGGTGTCATGCAGTCAGGAGACCAAGCGTCCACAAATGATAGATTTTATAGATGTTACcgcagc                                                                                                >  2:198001/11‑141 (MQ=255)

                                   ggAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACagcagc                                                                                                >  2:217069/1‑141 (MQ=255)

                                     aaCAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCAt                                                                                              <  1:325693/141‑1 (MQ=255)

                                      aCAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAACCGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCAtt                                                                                             >  1:55574/1‑141 (MQ=255)

                                       cAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTa                                                                                            <  1:255774/141‑1 (MQ=255)

                                        aaGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAg                                                                                           <  2:105726/141‑1 (MQ=255)

                                        aaGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAg                                                                                           <  2:608938/141‑1 (MQ=255)

                                          gCTTTATTTCAGCACCAACTACATTTTAAAGCGGAAGTTCAGTCATCATTACCTTGTGAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCGGCGTTAGat                                                                                         >  1:344447/1‑141 (MQ=255)

                                          gCTTTATTTCAGCACCAACTACATTTTAAAACGGGAGGTCAGTCATCATTACATTTTAAGTTAAAAGGAGATGTGTCATGCAAACATGCGCCAACACGTCAACAAATGATAGCTTTTATAGTCGTTACagcggcgtgaggg                                                                                         >  2:517212/1‑134 (MQ=255)

                                           cTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTTTAGTTGTTACAGCAGCATTAGata                                                                                        >  2:72658/1‑141 (MQ=255)

                                            tttATTTCAGCACCAACTACATTTTAAAACTGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCCATCACGCGCCGAAACGTCAACAAACCATCGATTTTATAGTCGTTACAGCAGCATTAGatat                                                                                       <  2:490952/141‑1 (MQ=255)

                                            tttATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGatat                                                                                       <  2:351598/141‑1 (MQ=255)

                                             ctctttcgcaaCCAACTAAATTTCTAAACGTACGTTCCCACATCATTATGCTATAAGTCAACAGGAGATGTGTCATGCAATCACGAGCCAAGACGTCAATAAATGATAGTTTTTATAGTTGTTACAGCAGCATTAGATAtt                                                                                      <  2:405732/131‑1 (MQ=255)

                                              tATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTg                                                                                     <  1:632160/141‑1 (MQ=255)

                                                     gCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGCTGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAattatt                                                                              >  2:201652/1‑141 (MQ=255)

                                                      cACCAACTACATTTTTAAACGGAAGTTCAGTCATCATAACTTTATAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAACGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAAtcatta                                                                             <  1:471706/141‑1 (MQ=255)

                                                        ccAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTAGTTCCAGCAGACTTATATATTGAATTATTACg                                                                           >  1:179752/1‑141 (MQ=255)

                                                           aCTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTc                                                                        <  2:180750/141‑1 (MQ=255)

                                                               cATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTg                                                                    >  2:590223/1‑141 (MQ=255)

                                                               cATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGGGGTTATAACAGCATTAGATAATGAATTGATACGATCACTg                                                                    >  1:494681/1‑141 (MQ=255)

                                                                        acgtacgTTCAGTTATCATTCCCCTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTacaaca                                                           <  1:198001/135‑1 (MQ=255)

                                                                        aCGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTacaaca                                                           <  1:217069/141‑1 (MQ=255)

                                                                         cGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATCTTGACTTCTTACGTTCCCTGCTTaccacac                                                          >  2:642258/1‑140 (MQ=255)

                                                                           gAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGaa                                                        <  2:647737/141‑1 (MQ=255)

                                                                               ttCAGTCATCATTACCTTTTAAGTTAACAGGGGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAattta                                                    <  1:304939/141‑1 (MQ=255)

                                                                                  aGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATCGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAatttattt                                                 <  2:493613/141‑1 (MQ=255)

                                                                                    tcatcaTTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTgg                                               <  1:512341/141‑1 (MQ=255)

                                                                                      atcatTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCCGCATTAGAGATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTc                                             <  1:520176/141‑1 (MQ=255)

                                                                                      atcatTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTc                                             <  1:95964/141‑1 (MQ=255)

                                                                                        catTACCTTTTAAGTTAACAGGAGATGTTTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTg                                           <  1:379025/141‑1 (MQ=255)

                                                                                           tACCTTTTTAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTGCGTTCACTGGTTACAACAGAATTTATTTGGTCTGTcc                                        <  2:573537/141‑1 (MQ=255)

                                                                                            aCCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTccc                                       >  2:419535/1‑141 (MQ=255)

                                                                                             ccTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGCTAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTAACTGGTTACAACAGACTTTATTTGGTCTGTCCCt                                      <  1:140390/141‑1 (MQ=255)

                                                                                              cTTTTGAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTg                                     <  2:28349/141‑1 (MQ=255)

                                                                                               ttttAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTgg                                    >  2:626822/1‑141 (MQ=255)

                                                                                                 ttaagttaagAGGAGATGTGCCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGcc                                  <  1:311985/141‑1 (MQ=255)

                                                                                                 ttAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGcc                                  >  1:289418/1‑141 (MQ=255)

                                                                                                  tAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCg                                 <  1:437622/141‑1 (MQ=255)

                                                                                                        aaCAGGGGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATCTTGAATCATTATGTTCATTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGATTTGa                           <  2:501114/141‑1 (MQ=255)

                                                                                                         aCAGGAGATGTTACATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTTCCTGGCCGCTTTGAc                          <  1:245202/141‑1 (MQ=255)

                                                                                                          cAGGAGATGTGTCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCATGGCCGCTTTGACa                         >  2:187752/1‑141 (MQ=255)

                                                                                                              agaTGTGTCATGGAACCATCCGCCAAAACGTCAACAAATGATCGATTTTATAGCTGTTAGAGCAGCATTAGATATTGCATTATTACGTTCACTGGTTACAACAGAATTTCTTTGGTCTGTCCCTGGTCGCTTTGACAtata                     <  2:172115/141‑1 (MQ=255)

                                                                                                                gtgtgTCATGCAATCAGGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACg                   <  1:95228/140‑1 (MQ=255)

                                                                                                                  gtgtCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGa                 >  2:172563/1‑141 (MQ=255)

                                                                                                                  gtgtCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGa                 >  1:47853/1‑141 (MQ=255)

                                                                                                                   ttgcATGCAATCATGCGCCAAAACGTCAACAAATGAGAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGAc                <  1:98131/138‑1 (MQ=255)

                                                                                                                   tgtCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGAc                <  2:581762/141‑1 (MQ=255)

                                                                                                                   ggtaaTGCAATCATGCTCCAAAACGTCCACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGAc                <  2:511019/137‑1 (MQ=255)

                                                                                                                     tCATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATCCGGACCt              >  1:536276/1‑141 (MQ=255)

                                                                                                                      cATGCAATCATGCGCCACAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCAGCTTTGACATATACGGACCta             >  2:546060/1‑140 (MQ=255)

                                                                                                                      cATGCAATCATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGAAccgc             >  2:329555/1‑139 (MQ=255)

                                                                                                                             tCATGCGCCAAAAAGGCAACAAATGCTAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATCTATTTGGTCTGTACCTGGCCGCTTTGACATATACGGACCTCAAATAtt      <  2:502975/141‑1 (MQ=255)

                                                                                                                              cATGCGCCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTCAAATATTa     >  2:131267/1‑141 (MQ=255)

                                                                                                                              aaTGCGCCAAAACGTCAACAAAGGATAGATTTTATAGTTGTTACAGCAGCATTAGATATCGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTCAAATATTa     <  1:508093/140‑1 (MQ=255)

                                                                                                                               aTGCGCCAAAACGTCAACAAATGATAGAGTTTATAGTTGTTAAAGTTATTGGAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTCAAATATTaa    <  1:482899/141‑1 (MQ=255)

                                                                                                                                 gcgcCAAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTCAAATATTAAtt  >  1:43558/1‑141 (MQ=255)

ATGCATGGCGTTGGTCCTAAAGCTATATCAATATTGGAACAAGCTTTATTTCAGCACCAACTACATTTTAAAACGGAAGTTCAGTCATCATTACCTTTTAAGTTAACAGGAGATGTGTCATGCAATCATGCGCCTAAACGTCAACAAATGATAGATTTTATAGTTGTTACAGCAGCATTAGATATTGAATTATTACGTTCACTGGTTACAACAGAATTTATTTGGTCTGTCCCTGGCCGCTTTGACATATACGGACCTCAAATATTAATT  >  CP000730/2855953‑2856222

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A