Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A21 F20 I0 R1 109 83.9 1834642 93.1% 1708051 141.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 1,105,994 T→C 100% T12T (ACT→ACC)  pdhD → dihydrolipoyl dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007301,105,9940TC100.0% 246.2 / NA 74T12T (ACT→ACC) pdhDdihydrolipoyl dehydrogenase
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (44/30);  total (44/30)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TTTGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACTATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCA  >  CP000730/1105857‑1106123
                                                                                                                                         |                                                                                                                                 
tttGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACcata                                                                                                                                >  1:754642/1‑141 (MQ=255)
  tGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGt                                                                                                                              >  1:362422/1‑141 (MQ=255)
    aCCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTaa                                                                                                                            >  2:837971/1‑141 (MQ=255)
     ccACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCCATGGAAACAGATACCATAGTAAt                                                                                                                           >  2:916552/1‑141 (MQ=255)
     ccACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAAt                                                                                                                           >  1:475960/1‑141 (MQ=255)
       acaGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCg                                                                                                                         >  2:126466/1‑141 (MQ=255)
           aCAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGGAATCGGAGc                                                                                                                     >  2:381307/1‑141 (MQ=255)
            cAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAACAAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACCGATACCATAGTAATCGGAGCa                                                                                                                    >  1:125674/1‑141 (MQ=255)
            cAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCa                                                                                                                    <  1:828316/141‑1 (MQ=255)
                tttattgTGAAACTGGACAAAATGCAATGAATAACATTAAGCGTTGATTAAATAAGCCCGAATTATTATTAATGGAGGGTGAAAACATTTCAGTGGGGGATTTCCCAATTGACACATATACCATAGTAATCGGAGCAGGTc                                                                                                                <  2:307710/135‑1 (MQ=255)
                 tGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTcc                                                                                                               >  1:862048/1‑141 (MQ=255)
                   agggTGCAACTGGCCAAAATGCAATAAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCtg                                                                                                             <  2:571644/139‑1 (MQ=255)
                    tGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCtgg                                                                                                            <  1:677715/141‑1 (MQ=255)
                        gCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGa                                                                                                        >  1:681175/1‑141 (MQ=255)
                        gCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGa                                                                                                        <  1:420828/141‑1 (MQ=255)
                        gCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATGAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGa                                                                                                        >  1:681572/1‑141 (MQ=255)
                         cAACTGTCCCAAATGCAATGAACCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGAt                                                                                                       <  2:520257/141‑1 (MQ=255)
                         cAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGAt                                                                                                       <  1:725503/141‑1 (MQ=255)
                           aCTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAAAGAGTATAAATGGAGGGGTAAAACATGGCAGTTCGAGCCTTAAAAATACACATTAATACCATAGTAATCGGAGCAGGACCGGGTGGATag                                                                                                     >  2:319536/1‑140 (MQ=255)
                              ggCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGtt                                                                                                  <  2:290070/141‑1 (MQ=255)
                                   aaaTGCAATGAATCACGTTAGACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATAGGAGCAGGGCCTGGTGGATACGTTgcaac                                                                                             >  2:553498/1‑139 (MQ=255)
                                   aaaTGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTgcagc                                                                                             >  1:763221/1‑141 (MQ=255)
                                       gCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAAtt                                                                                         <  1:689117/141‑1 (MQ=255)
                                       gCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAAtt                                                                                         <  2:854624/141‑1 (MQ=255)
                                               tCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGc                                                                                 <  1:539790/141‑1 (MQ=255)
                                                 acaTTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGCGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTc                                                                               <  1:651075/141‑1 (MQ=255)
                                                 acaTTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTc                                                                               <  1:602258/141‑1 (MQ=255)
                                                   aTTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCGGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCaa                                                                             >  1:157784/1‑141 (MQ=255)
                                                   aTTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGATCaa                                                                             >  1:190045/1‑141 (MQ=255)
                                                   aTTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTCAAGCTCaa                                                                             >  1:63415/1‑141 (MQ=255)
                                                       aaCGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAg                                                                         <  2:406082/141‑1 (MQ=255)
                                                               ttaAGTAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGCTCCTGGTGGGTACGTTGCAGCAATTGGTGCAGCTCGATTAGGACaaaaa                                                                 >  2:550779/1‑141 (MQ=255)
                                                               ttaAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGTTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCGGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACaaaaa                                                                 >  1:400572/1‑141 (MQ=255)
                                                                    taatCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAAc                                                            <  1:809065/141‑1 (MQ=255)
                                                                    taatCAAGATTTATTATTAATGGAGGGGTAAAACAGGGTAGTTGGAGCTCTCCCAGTTGAAACATATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAAc                                                            <  1:431800/141‑1 (MQ=255)
                                                                    aaatCCAGAAGTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAAc                                                            <  2:791447/140‑1 (MQ=255)
                                                                       tCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAAt                                                         >  1:30707/1‑141 (MQ=255)
                                                                        ccAGAATTATTATTAAGGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATc                                                        <  2:287574/141‑1 (MQ=255)
                                                                            aaTTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATGGTTg                                                    >  1:886832/1‑141 (MQ=255)
                                                                              ttattattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTgag                                                  >  1:230263/1‑141 (MQ=255)
                                                                               tattattaATGGAGGGGTGAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGAGACCGTAGGAATCGGAGCAGGGCCTGGTGGATACGTCGCAGGAATGCGTGCGGCTCAATTAGGCCAAAAAGTAACAATGGTTgaga                                                 >  2:454736/1‑141 (MQ=255)
                                                                               tattattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCCGCAATTCGTGCAGCTCAATTAGGACAAAAAGTACAAATCGtgaaga                                                 >  2:161735/1‑136 (MQ=255)
                                                                               tattattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTgaga                                                 >  1:803314/1‑141 (MQ=255)
                                                                                  tattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAg                                              >  1:311597/1‑141 (MQ=255)
                                                                                  tattaATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAg                                              >  1:311607/1‑141 (MQ=255)
                                                                                       aTGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGCGAAAGGTAAt                                         >  1:601675/1‑141 (MQ=255)
                                                                                              gttAAAACATGTTAGTTGGAGATTTCGCAATTGAAACAGATACCATAGTAACCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTtggtg                                  <  2:815921/139‑1 (MQ=255)
                                                                                                 aaaaCATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAACAGTAACAATCGATGAGAAAGGTAATCTtggtggag                               >  2:686814/1‑139 (MQ=255)
                                                                                                 aaaaCATGGAAGTTGGAGAATTCAACATAAAAACAGTAACCATAGTAATCGGTGCAGTTCCTGGGGGATACGTTGCAGCAATTCGTGCAGTTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGgtggtg                               <  2:862048/141‑1 (MQ=255)
                                                                                                  aaaCATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGgtgt                              <  1:546271/141‑1 (MQ=255)
                                                                                                  aaaCATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGgtgt                              <  1:260424/141‑1 (MQ=255)
                                                                                                  aaaCATGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGgggt                              >  2:796174/1‑141 (MQ=255)
                                                                                                   aaCATGGTAGTTTGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGTATACGTTGCAGCAATTCGTGCAGCCCAATTAAGACCAAAAGTAACAATCGATGAGCAAGGTAGGCAtggtgggatt                             >  2:616942/1‑137 (MQ=255)
                                                                                                       tGGTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCt                         >  1:115284/1‑141 (MQ=255)
                                                                                                        ggTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTGATCTTGGTGGTGTGTGCtt                        >  1:322942/1‑141 (MQ=255)
                                                                                                        ggTAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCtt                        >  2:118854/1‑141 (MQ=255)
                                                                                                          tAGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTaa                      <  1:561096/141‑1 (MQ=255)
                                                                                                          tAGTTGGAGATTTCCCAATTGAAACAGATACCAGTGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGGGGTGTTTGCTTaa                      >  1:531214/1‑141 (MQ=255)
                                                                                                           aGTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTAGTGTTTGCTTaaa                     >  2:656277/1‑141 (MQ=255)
                                                                                                            gTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAAc                    >  1:307477/1‑141 (MQ=255)
                                                                                                            gTTGGAGATTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGATGTTTGCTTAGAc                    >  1:294349/1‑141 (MQ=255)
                                                                                                                 agaTTTCCCAATTGAAACAGATACCATAGTAATCGGAGGAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAAGTAGGACAAAAAGTACCAATCGTTGAGAAAGGAAATTTGGGTGGGGTTTGCTTACACGTCgg               >  2:103123/1‑141 (MQ=255)
                                                                                                                  gaTTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGACAGGTAATCTTGGTGGTTTTTGCTTAAACGTAGGa              <  1:629498/141‑1 (MQ=255)
                                                                                                                  gaTTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGa              >  2:467897/1‑141 (MQ=255)
                                                                                                                  gaTTTCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGa              >  1:791199/1‑141 (MQ=255)
                                                                                                                      tCCCAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTa          >  1:746939/1‑141 (MQ=255)
                                                                                                                       cccAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTAt         <  1:51591/141‑1 (MQ=255)
                                                                                                                       cccAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTAt         <  1:817728/141‑1 (MQ=255)
                                                                                                                        ccAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTAtt        >  1:49511/1‑141 (MQ=255)
                                                                                                                         cAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGTTGAAACGTAGGATGTATTc       >  1:847957/1‑141 (MQ=255)
                                                                                                                         cAATTGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTc       >  1:168177/1‑141 (MQ=255)
                                                                                                                          atgtGAAACAGATACCATAGTAATCGGGTCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAGAAAGTAACTATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTcc      <  2:89077/138‑1 (MQ=255)
                                                                                                                          aaTTGAAACAGATACCATAGAAATCGGGGCAGGTCCTGGTGGATACGTTGCAGCAATTCGAGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTcc      <  2:136372/141‑1 (MQ=255)
                                                                                                                             tGAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTc   <  1:549818/141‑1 (MQ=255)
                                                                                                                              gAAACAGATACCATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCa  <  1:141839/141‑1 (MQ=255)
                                                                                                                                         |                                                                                                                                 
TTTGACCACAGACAAATTGATGGTGCAACTGGCCAAAATGCAATGAATCACATTAAACGTTTATTAAATAATCCAGAATTATTATTAATGGAGGGGTAAAACATGGTAGTTGGAGATTTCCCAATTGAAACAGATACTATAGTAATCGGAGCAGGTCCTGGTGGATACGTTGCAGCAATTCGTGCAGCTCAATTAGGACAAAAAGTAACAATCGTTGAGAAAGGTAATCTTGGTGGTGTTTGCTTAAACGTAGGATGTATTCCTTCA  >  CP000730/1105857‑1106123

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A