Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A21 F20 I0 R1	109	83.9	1834642	93.1%	1708051	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,744,473	C→T	100%	A67T (GCT→ACT)	apt ←	adenine phosphoribosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,744,473	0	C	T	100.0%	224.0 / ‑6.5	77	A67T (GCT→ACT)	apt	adenine phosphoribosyltransferase
Reads supporting (aligned to +/- strand): ref base C (0/0); major base T (39/36); minor base G (2/0); total (41/36)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

CCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAATATCCT  >  CP000730/1744340‑1744610

ccTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATATTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGTAAAGCCAATCCCTATTGATTAAGTTACAGGa                                                                                                                                    >  1:38553/1‑141 (MQ=255)

  tGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTACGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACa                                                                                                                                  <  2:595447/141‑1 (MQ=255)

        acttGCATCTTTGTGCACTGTTAAAACATTTGTACAATATGCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCCTTCCATTATTTACAGGACAGCCAAt                                                                                                                            <  2:647497/139‑1 (MQ=255)

           tGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGAt                                                                                                                         <  2:331856/141‑1 (MQ=255)

                             ttgaaCATTTGTACCATATTTTAGGTCATACTCATAACGAATGACGTCACGCGGTAATTTACGTTCTTTTCTAACAGGTGCAACGCCAATCCCCGTTGAATAAGTTACAGGATAGCGAATGATAAAGCCACGCGCTTCAgg                                                                                                       >  2:154738/4‑141 (MQ=255)

                             tAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCCCGCGCTTCAgg                                                                                                       >  1:278603/1‑141 (MQ=255)

                             tAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAgg                                                                                                       >  2:426652/1‑141 (MQ=255)

                                     ttGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATACGGTAGAGGTGAGCCAAGGATAAAGCCACGCGCTTCAGGTCCTACaa                                                                                               >  1:852617/1‑141 (MQ=255)

                                     ttGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCTAATGATATAGCCACGCGCTTCTGGTCCTACat                                                                                               >  1:426735/1‑140 (MQ=255)

                                     ttGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGCCCTACaa                                                                                               >  2:486494/1‑141 (MQ=255)

                                     ttGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAACCACGCGCTTCAGGCCCTACaa                                                                                               >  2:722132/1‑141 (MQ=255)

                                        tACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGa                                                                                            <  1:780031/141‑1 (MQ=255)

                                          ccATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAACCAATCCCCATTGAATAAGTTACAGGACAGCCAATGCTAAAGCCTCGCGCTTCGGGTCCTGCACCGatt                                                                                          >  1:296913/1‑140 (MQ=255)

                                               ttCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAAc                                                                                     <  1:154128/141‑1 (MQ=255)

                                                 cTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTCCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACAt                                                                                   <  1:196444/141‑1 (MQ=255)

                                                   aGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACAtcc                                                                                 >  2:560470/1‑140 (MQ=255)

                                                    ggTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACAtctc                                                                                >  2:244123/1‑141 (MQ=255)

                                                    ggTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACAtctc                                                                                >  2:285089/1‑141 (MQ=255)

                                                      tCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTg                                                                              <  2:452469/141‑1 (MQ=255)

                                                       cATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATTTCTGt                                                                             >  1:915610/1‑141 (MQ=255)

                                                       cATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGt                                                                             <  1:504291/141‑1 (MQ=255)

                                                       cATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAACCCACGCGCTTCAGTTCCTACAACGATATCACCATCTCTGt                                                                             >  1:420442/1‑141 (MQ=255)

                                                       cATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTAAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGCCCTACAACGATATCAACATCTCTGt                                                                             >  1:202453/1‑141 (MQ=255)

                                                        acaCTCATAACGAATGACTGCACCAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAATCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTc                                                                            <  2:792762/139‑1 (MQ=255)

                                                        aTACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTc                                                                            >  1:205159/1‑141 (MQ=255)

                                                        aTACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTc                                                                            <  2:739634/141‑1 (MQ=255)

                                                           cTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAACGCCAAGCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCttt                                                                         <  2:492846/141‑1 (MQ=255)

                                                             cATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTg                                                                       >  2:527139/1‑141 (MQ=255)

                                                             cATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTg                                                                       >  2:565417/1‑141 (MQ=255)

                                                             cATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTg                                                                       >  1:689474/1‑141 (MQ=255)

                                                                 aCGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCCCTGTCTTTTGCGTa                                                                   >  1:852921/1‑141 (MQ=255)

                                                                   gAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCACCATCTCTGTCTTTTGCGTAtt                                                                 >  1:99964/1‑141 (MQ=255)

                                                                   gAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTTCGTAtt                                                                 >  1:462973/1‑141 (MQ=255)

                                                                   gAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGCCTTTTGCGTAtt                                                                 >  1:433886/1‑141 (MQ=255)

                                                                   gAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCAGTcgttttcgtttt                                                                 >  1:477588/1‑141 (MQ=255)

                                                                     aTGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCt                                                               >  1:162542/1‑141 (MQ=255)

                                                                     aTGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCt                                                               >  1:626961/1‑141 (MQ=255)

                                                                     aTGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACCATATAAACATCCCTGTCTTTTGCGTATTCt                                                               >  1:800441/1‑141 (MQ=255)

                                                                     aTGACTTCACGAGGTAATATCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATAATAAAGCCACGCGCTTCAGATCCTACAACGATATCAACATCCCCATGTTTTGCGCAtttt                                                               >  2:407865/1‑139 (MQ=255)

                                                                         cTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCACCGTTGAATAAGGTACAGGACAGCCAATGATAAAGCCACGCGCTTCGGGTCCTACAAAGATATCAACATCGTAGTCTTTTTCATATTCTACaa                                                           >  1:188215/1‑141 (MQ=255)

                                                                           tCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAAtt                                                         <  1:18374/141‑1 (MQ=255)

                                                                           tCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTAATCTACAAtt                                                         <  1:668191/141‑1 (MQ=255)

                                                                            cACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTTCGTATTCTACAAttt                                                        <  2:153851/141‑1 (MQ=255)

                                                                                cagaaaTTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTCCAGTTTTATc                                                    >  2:9138/5‑141 (MQ=255)

                                                                                    aaTTCCCCTTCTGTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGtt                                                <  1:104810/141‑1 (MQ=255)

                                                                                     aTTTCCCTTCTTTTCTAACAGGTGCAAAAACAATCCCCATTGAATAAGTTACAGGAAAGACAATAATAAAGCCACGCGATTAAGGTCCTACAACGATATCACCATCTCTGGCATTTCCGTATTCTGCAATTTTATCTGtgt                                               >  2:57752/1‑139 (MQ=255)

                                                                                         cccTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATa                                           <  1:133985/141‑1 (MQ=255)

                                                                                           cttcttTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGc                                         >  2:163520/1‑141 (MQ=255)

                                                                                           cttcttTTCTAACAAGTGCAAAGCCAATTACCATAAAATAAGTTACAGGCCAGCCAATGATTAAGAACCGCGATTCAGGTCCTACAACGATATCAACATCTATATCTTTTGCGTATTCTACAATTTTAACTGTTGAATAGc                                         >  2:339095/1‑141 (MQ=255)

                                                                                             tcttTTCTAACAGGTGCAAAGCCAACCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCa                                       <  1:489/141‑1 (MQ=255)

                                                                                              ttttgCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTAGAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCat                                      <  2:473923/140‑1 (MQ=255)

                                                                                              ctcttCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCat                                      <  2:610328/138‑1 (MQ=255)

                                                                                               ttttCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCata                                     <  2:538331/141‑1 (MQ=255)

                                                                                               ttttCCAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACATTTTTATCTGTTGCATAGCCata                                     <  2:197066/141‑1 (MQ=255)

                                                                                                  tcgaaCATGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGc                                  <  1:466369/138‑1 (MQ=255)

                                                                                                  tCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGTGACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGc                                  <  2:427736/141‑1 (MQ=255)

                                                                                                    tAACAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATCTGCtt                                >  1:688169/1‑141 (MQ=255)

                                                                                                     aaCAGGTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTc                               <  2:664586/141‑1 (MQ=255)

                                                                                                        cggTGCAAAGCCAACCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCCTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCAcc                            <  1:286921/140‑1 (MQ=255)

                                                                                                          gTGCAAAGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCAt                          <  2:767230/141‑1 (MQ=255)

                                                                                                              aaaGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCGCCATTATc                      >  2:812969/1‑141 (MQ=255)

                                                                                                               aaGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTCCAATTTTATCTGTTGCATAGCCATATGCTTCACCCTTATcc                     >  1:338668/1‑141 (MQ=255)

                                                                                                               aaGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCCTAGCCATATGCTTCACCATTATcc                     <  2:218561/141‑1 (MQ=255)

                                                                                                               aaGCCAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATcc                     <  1:148071/141‑1 (MQ=255)

                                                                                                               aaGCCAATCCCCATTGAAGAACTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATcc                     <  2:791920/141‑1 (MQ=255)

                                                                                                                  ccataccccATTGAATAAGTTACAGGACGGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGAGTATTTTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATa                  <  2:597639/136‑1 (MQ=255)

                                                                                                                  ccAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATa                  >  2:64177/1‑141 (MQ=255)

                                                                                                                  ccAATCCCCATCGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATa                  <  1:733535/141‑1 (MQ=255)

                                                                                                                   cAATCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATaa                 <  1:23179/141‑1 (MQ=255)

                                                                                                                      tCCCCATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGTGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTg              <  2:120425/141‑1 (MQ=255)

                                                                                                                       ccccATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTgt             >  2:495355/1‑141 (MQ=255)

                                                                                                                         ccATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTCTCCATAATTgtag           >  2:718954/1‑141 (MQ=255)

                                                                                                                          cATTGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTgtagt          >  1:729087/1‑141 (MQ=255)

                                                                                                                            ttGAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATAATCCATAATTGTAGTaa        >  2:710985/1‑141 (MQ=255)

                                                                                                                              gAATAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAata      <  2:205159/141‑1 (MQ=255)

                                                                                                                                aTAAGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAAGTGTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAATATc    <  1:527139/141‑1 (MQ=255)

                                                                                                                                  aaGTTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAATATCCt  <  1:752007/141‑1 (MQ=255)

CCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATCCATAATTGTAGTAATATCCT  >  CP000730/1744340‑1744610

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A