Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A3 F121 I0 R1	105	70.6	1582072	92.0%	1455506	141.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	2,610,079:1	(T)_7→8	100%	coding (447/795 nt)	USA300HOU_2473 ←	lipoprotein

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,610,072	1	.	T	57.4%	108.4 / 88.4	54	coding (454/795 nt)	USA300HOU_2473	lipoprotein
Reads supporting (aligned to +/- strand): ref base . (10/13); new base T (12/19); total (22/32)
Fisher's exact test for biased strand distribution p-value = 7.84e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: Polymorphic indel expands or contracts a homopolymer stretch.

ACATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATAAAATAATAC  >  CP000730/2609933‑2610205

aCATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTACTATCTTTAAAGGTGCCATAGTGTACAAAGAACTTAAAGTTTTCAATc‑tc‑t                                                                                                                                        >  1:340045/1‑141 (MQ=255)

aCATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATc‑tc‑t                                                                                                                                        >  1:704951/1‑141 (MQ=255)

 cATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑tt                                                                                                                                       <  2:578802/141‑1 (MQ=255)

 cATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑tt                                                                                                                                       <  1:681185/141‑1 (MQ=255)

     ataATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑ttttt‑t                                                                                                                                  >  2:98608/1‑141 (MQ=255)

       aaTCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑ttttt‑t‑tt                                                                                                                               >  1:684931/1‑140 (MQ=255)

        atcatcATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑ttttt‑t‑tta                                                                                                                              >  1:747815/1‑139 (MQ=255)

          catcatTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑ttttt‑t‑ttaat                                                                                                                            >  2:135609/1‑137 (MQ=255)

             catTATTCAATTGATACTTTGCCGAATAACTTGGTACATTACGATTATATGAAATATCACCATCTTTATAATCCTTAATATCTCTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑ttttt‑t‑ttcacttg                                                                                                                         <  2:341887/141‑8 (MQ=14)

              attattCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTc                                                                                                                        <  1:21242/141‑1 (MQ=255)

                  ttCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACACAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCCtt                                                                                                                     >  1:708034/1‑141 (MQ=255)

                   tCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑TGTAACTTGTCATTc                                                                                                                    >  1:690855/1‑141 (MQ=255)

                   tCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCg                                                                                                                   >  2:65610/1‑141 (MQ=255)

                   tCAATTGATACTTCGCCGAATAACTTGGTACTTTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTc                                                                                                                    <  1:592367/141‑1 (MQ=17)

                      aTTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTa                                                                                                                <  2:335259/141‑1 (MQ=255)

                        tGAAATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAg                                                                                                               <  2:309517/141‑1 (MQ=255)

                         gATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGt                                                                                                              <  1:597805/141‑1 (MQ=255)

                          atatTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTg                                                                                                             <  1:418870/141‑1 (MQ=255)

                              tttGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTc                                                                                                        <  2:347475/141‑1 (MQ=255)

                               ttGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAATGCACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTc                                                                                                        <  2:284649/141‑1 (MQ=255)

                                    gAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGt                                                                                                  >  1:612961/1‑141 (MQ=255)

                                     aaTAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTa                                                                                                 <  2:287876/141‑1 (MQ=255)

                                      aTAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATGCGGTGGTGGCTTCGTTGGttt                                                                                                >  1:83161/1‑139 (MQ=255)

                                       tAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGAATg                                                                                               >  2:222122/1‑141 (MQ=255)

                                              gTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGATATGAttttt                                                                                         >  1:762843/1‑140 (MQ=255)

                                                  aTTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TA‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATg                                                                                    >  1:257479/1‑141 (MQ=255)

                                                         ttATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCAt                                                                              <  2:240502/141‑1 (MQ=255)

                                                           atatGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCAttt                                                                            <  1:654913/141‑1 (MQ=255)

                                                             atGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCAttttt                                                                          <  2:504651/141‑1 (MQ=255)

                                                                aaaTATCACCATCTTTATGATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTAcc                                                                       <  1:161842/141‑1 (MQ=255)

                                                                      cACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCACTC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATAc                                                                 <  1:682955/141‑1 (MQ=255)

                                                                       aCCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATAcc                                                                >  2:312122/1‑141 (MQ=255)

                                                                               tataATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTtca                                                        <  1:173028/141‑1 (MQ=255)

                                                                                ataATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTtctt                                                       >  2:278060/1‑139 (MQ=255)

                                                                                     taTTAATATCGTTAAAGTTGCCATTTTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATcc                                                  <  2:230068/140‑1 (MQ=255)

                                                                                        tAATATCTTTAAAGTTGCCATTTTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTg                                              <  2:699927/141‑1 (MQ=255)

                                                                                        tAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTg                                              <  2:700324/141‑1 (MQ=255)

                                                                                            atCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTTTTCTTTCTTTGTTCt                                          >  2:737715/1‑141 (MQ=25)

                                                                                            atCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCt                                          >  2:737707/1‑141 (MQ=255)

                                                                                            atCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCt                                          >  2:87205/1‑141 (MQ=255)

                                                                                               tttAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTTTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGc                                        >  2:663236/1‑141 (MQ=255)

                                                                                                 tcaaGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGt                                     <  2:294636/139‑1 (MQ=255)

                                                                                                  aaaGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGt                                     <  1:488764/141‑1 (MQ=255)

                                                                                                    aGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTa                                   >  1:752097/1‑141 (MQ=255)

                                                                                                    aGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTa                                   <  1:242631/141‑1 (MQ=255)

                                                                                                               tGTACAAAGAACTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTGTTCCGTTCCATCTCTACCTTAGACCTTTTCTCATCATCCTTTGGTCTGCCGTTActgtcatctgt                        <  2:166298/141‑1 (MQ=25)

                                                                                                               tGTAAAAAGAACTTAAAGTTTTCAATC‑TTTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTActgtcatctgt                        <  2:106713/141‑1 (MQ=255)

                                                                                                                       gAACTTAAATTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCAc                <  1:98608/141‑1 (MQ=255)

                                                                                                                       gAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACCTCTCAATCCGTAGTTGCTGCCTTGGTATGATTTTATTATGTGCCATTTGTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACt               <  2:542478/141‑1 (MQ=255)

                                                                                                                       aaaCTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTTTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTActgtcatctgccctctctcg               <  2:398918/140‑11 (MQ=255)

                                                                                                                         aCTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTTTTTTTTTTTTGGTCTGCCATTTCTGTCTTCTGTCTTTTCTCtt              >  2:546373/1‑141 (MQ=25)

                                                                                                                         aCTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACtt              <  1:657069/141‑1 (MQ=255)

                                                                                                                         aCTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTAGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCCTTTCACtt              >  2:180571/1‑141 (MQ=255)

                                                                                                                         aCTTAAAGTTTTCAATC‑TC‑TTTTTCG‑TAACTTTTCAATTGGTCGACCAATCCTTGTTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACtt              <  1:569764/141‑1 (MQ=255)

                                                                                                                          cTTAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATAATCCTTTGGTCTGCCGTTACTGTCATCTGTCTTTTCACttt             >  1:657128/1‑140 (MQ=255)

                                                                                                                           ttAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTtat            >  1:270704/1‑141 (MQ=255)

                                                                                                                            tAAAGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTtata           >  1:518591/1‑141 (MQ=255)

                                                                                                                             taaGTTTTCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATaa          <  2:67978/140‑1 (MQ=255)

                                                                                                                             aaaGTTTTCAATCTTT‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATaa          <  2:658932/141‑1 (MQ=255)

                                                                                                                             aaaGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCCTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATaaa         >  1:422993/1‑141 (MQ=255)

                                                                                                                              accttttCAACT‑CC‑TTTTT‑T‑TACCTTGTCATTCGGTAGTGGTCTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCAGCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATaaaa        <  1:222122/138‑1 (MQ=255)

                                                                                                                                   ttCAATC‑TCTTTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCTTTTGATCTGCCGCTACTGTCACCGGTCATTCCACGTCTAAaatata    >  2:55719/1‑139 (MQ=255)

                                                                                                                                    tCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATAAAATAATAc  <  2:612961/141‑1 (MQ=255)

ACATTATAATCATCATTATTCAATTGATATTTTGCCGAATAACTTGGTACATTAGGATTATATGAAATATCACCATCTTTATAATCATTAATATCTTTAAAGTTGCCATATTGTACAAAGAACTTAAAGTTTTCAATC‑TC‑TTTTT‑T‑TAACTTGTCATTCGGTAGTGGCTTCGTTGGTATGATTTTATTATGTTCCATTTTTACCGGATACCTTTTTTCATCATCCTTTGGTCTGCCGTTACTGTCATCTGTCATTTCACTTATAAAATAATAC  >  CP000730/2609933‑2610205

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A