Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F184 I0 R1	46	69.8	1527574	94.8%	1448140	140.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,744,362	G→A	100%	H104Y (CAC→TAC)	apt ←	adenine phosphoribosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,744,362	0	G	A	100.0%	186.9 / ‑6.5	69	H104Y (CAC→TAC)	apt	adenine phosphoribosyltransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (31/37); minor base T (1/0); total (32/37)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

ATTATAAATGCAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCC  >  CP000730/1744229‑1744497

attATAAATCCAATACCAACAACGATACCGCCTAACGTTTCAACTAATTTTAATGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCAGCGGTAACTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGt                                                                                                                                   <  1:348680/140‑1 (MQ=255)

 ttATAAATGCAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCACTCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TTACCTGGTTTAATTGCATCT‑TTGTACATTGtt                                                                                                                                  >  1:200866/1‑140 (MQ=255)

 ttATAAATGCAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTTGTTTAATTGCATCT‑TTGTACATTGtt                                                                                                                                  >  1:230027/1‑140 (MQ=255)

 gtataAATGCAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGtt                                                                                                                                  <  2:565029/139‑1 (MQ=255)

  tataAATGCAATACCTACTACGATACCGCCTAATTTTTTATTTAATTTTATTGCTGCTTCAATCGTACCACGCGTAGCTAATAAATCATCTGTCATTAACACACGT‑TTACCTGGTTTAATTGCATTT‑TTGTTCATTGCTa                                                                                                                                 >  2:386327/1‑140 (MQ=255)

       aTGCAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACa                                                                                                                            <  2:138932/140‑1 (MQ=255)

          cAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACAttt                                                                                                                         <  1:112265/140‑1 (MQ=255)

            aTACCTACTACGATATCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGt                                                                                                                       <  2:92117/140‑1 (MQ=255)

            aTACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGt                                                                                                                       <  2:442013/140‑1 (MQ=255)

            aTACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGt                                                                                                                       <  2:449506/140‑1 (MQ=255)

            aTACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGt                                                                                                                       <  1:493871/140‑1 (MQ=255)

               ccTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTAcc                                                                                                                    <  1:474894/140‑1 (MQ=255)

               ccTACTACGATACCGCCTAATATTCTAATTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTAcc                                                                                                                    >  2:163171/1‑140 (MQ=255)

                ctactaCGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTATATTGTTAAAACATTTGTACCa                                                                                                                   <  2:335351/140‑1 (MQ=255)

                ctactaCGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAACAATTTGTGCCa                                                                                                                   >  2:629161/1‑140 (MQ=255)

                ctactaCGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCa                                                                                                                   >  2:434380/1‑140 (MQ=255)

                ctactaCGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCa                                                                                                                   >  2:435479/1‑140 (MQ=255)

                   ctacGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCATCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAGAACATTTGTACCatat                                                                                                                <  1:425545/140‑1 (MQ=255)

                     acGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTc                                                                                                              <  1:276057/140‑1 (MQ=255)

                       gATACCTCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGTATCT‑TTGTACATTGTTAAAACATTTGTCCCATATTCTa                                                                                                            <  2:257081/140‑1 (MQ=255)

                        gtccccccTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAg                                                                                                           <  2:182678/134‑1 (MQ=255)

                        aTACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAg                                                                                                           <  1:277303/140‑1 (MQ=255)

                           ccGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTc                                                                                                        >  1:237328/1‑140 (MQ=255)

                            cGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCa                                                                                                       >  1:732092/1‑140 (MQ=255)

                              ccTAATTTTTCAACTAGTTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATa                                                                                                     >  1:390357/1‑140 (MQ=255)

                                    ttttCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGATTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATa                                                                                               >  2:652055/1‑140 (MQ=255)

                                     tttCAACTAACTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATaa                                                                                              >  1:247305/1‑140 (MQ=255)

                                                 ttATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATCACGAATGACttaa                                                                                  >  2:755346/1‑138 (MQ=255)

                                                 ttATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCa                                                                                  >  2:587484/1‑140 (MQ=255)

                                                 ttATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACATCa                                                                                  >  2:587486/1‑140 (MQ=255)

                                                 ttATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCACAACGAAAGACTTCa                                                                                  >  2:584057/1‑140 (MQ=255)

                                                   aTTGCTGCTTCAATCGTACCACCAGAAGCTAATAAATCATCTGTGATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACg                                                                                >  1:416539/1‑140 (MQ=255)

                                                     tgctgcTTCAATCGTACCACGAGTGGCTAATAAATAATCTGTAATTAACACACGT‑TGACCTGGTTTAGTTGCATCT‑TTGTACATTGTTAAAACATTATTACCAAATTCTATGTCATACTCATAATGAAAAACTTAACGat                                                                              >  2:174209/1‑139 (MQ=255)

                                                     tgctgcTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATAT‑TTGTACATTTTTAAAACATTTGTACCATATTCTAGGTCATAATAATAACGAATGACTTCACGAg                                                                              >  1:154792/1‑140 (MQ=255)

                                                      gctgctTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAgg                                                                             <  2:719096/140‑1 (MQ=255)

                                                      gctgctTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACATGGCTTAATGGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAgg                                                                             <  1:362045/140‑1 (MQ=255)

                                                              aaTCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTcc                                                                     <  2:700215/140‑1 (MQ=255)

                                                                  gTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCcttc                                                                 <  1:413202/140‑1 (MQ=255)

                                                                    accaccAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCcttctt                                                               <  2:193453/140‑1 (MQ=255)

                                                                    accaccAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCcttctt                                                               <  2:9107/140‑1 (MQ=255)

                                                                    accaccAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCcttctt                                                               <  2:124154/140‑1 (MQ=255)

                                                                      caccaGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCtttt                                                             <  1:6505/140‑1 (MQ=255)

                                                                         caGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTa                                                          >  1:534473/1‑140 (MQ=255)

                                                                             aGCTAATAAATCATCTGTAATTCA‑TCGCGTATTACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTCACAg                                                      >  1:180951/1‑140 (MQ=255)

                                                                             aGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACaa                                                      >  2:644190/1‑139 (MQ=255)

                                                                             aGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAg                                                      <  2:732092/140‑1 (MQ=255)

                                                                             aGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAg                                                      <  2:27235/140‑1 (MQ=255)

                                                                                taataaATCATCTGTAATTAACACACGC‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTg                                                   <  1:527467/140‑1 (MQ=255)

                                                                                  ataaATCATCTGTAATTAATAAACGT‑TTACCTTTTTTCTTTG‑ACCTGATGCACAGTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCa                                                 <  1:744251/140‑1 (MQ=255)

                                                                                     aaTCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAg                                              >  1:639238/1‑140 (MQ=255)

                                                                                        catcTGTAATTAACACACGT‑TTACCTGGTTTAATTGCCTCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCa                                           <  2:339621/140‑1 (MQ=255)

                                                                                        catcTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGCGCAAAGCCa                                           <  1:558060/140‑1 (MQ=255)

                                                                                          tcTGTAATTAATCCACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAAt                                         <  2:140329/140‑1 (MQ=255)

                                                                                          tcTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGTTGCAAACCCAAt                                         >  1:701373/1‑140 (MQ=255)

                                                                                            tGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGAACTTTCCCTTCTTTTCTACAAGGTGCGAAGCCAATcc                                       >  1:625408/1‑140 (MQ=255)

                                                                                             gTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATccc                                      >  1:149097/1‑140 (MQ=255)

                                                                                               aaTTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCa                                    <  2:118242/140‑1 (MQ=255)

                                                                                               aaTTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCa                                    >  2:258033/1‑140 (MQ=255)

                                                                                               aaTTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCa                                    <  1:534816/140‑1 (MQ=255)

                                                                                                aTTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCAt                                   <  2:668415/140‑1 (MQ=255)

                                                                                                   aaCACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGa                                >  1:263715/1‑140 (MQ=255)

                                                                                                     cacacGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAAt                              <  2:390357/140‑1 (MQ=255)

                                                                                                       cacGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCAAGGTCCTAGTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAAAAGGTGCAAAGCCAATCCCCATTGAATaa                            >  2:651258/1‑140 (MQ=255)

                                                                                                         cGT‑TGACCTGGTTTAATTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGc                          <  1:389093/140‑1 (MQ=255)

                                                                                                                 cTGGTTTACTTGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTGATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAGCAGAGGCAAAGCCCAACCCCCTTGAATAACCTaacggc                   >  2:320912/1‑135 (MQ=255)

                                                                                                                           tGCATCT‑TTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGa         <  2:291110/140‑1 (MQ=255)

                                                                                                                            gCATCT‑TTGTACATTGTTAAAACATTTGTTCCATATTCTAGGTCTTACTCTTAACGATTGTCTTCACGTTGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGAt        <  1:202940/140‑1 (MQ=255)

                                                                                                                                 t‑ttGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGc   >  2:726605/1‑140 (MQ=255)

                                                                                                                                   ttGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGAACAGCCAATGATAAAGcc  >  1:380254/1‑140 (MQ=255)

ATTATAAATGCAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGT‑TGACCTGGTTTAATTGCATCT‑TTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCC  >  CP000730/1744229‑1744497

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A