Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F110 I0 R1	50	71.1	1529928	95.4%	1459551	140.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,744,362	G→A	100%	H104Y (CAC→TAC)	apt ←	adenine phosphoribosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,744,362	0	G	A	100.0%	211.0 / NA	69	H104Y (CAC→TAC)	apt	adenine phosphoribosyltransferase
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (38/31); total (38/31)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

ATTATAAATGCAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCA  >  CP000730/1744229‑1744498

attATAAATGCAATACCTACTACGATACCGCCTAATTTTTCCACTAATTTTATGGCTGCTTAAATCGTACCACCCGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGtt                                                                                                                                   >  2:57395/1‑141 (MQ=255)

  tataAATGGGAAACCTAGGACGATACCGGCTAAGTTGTGAACGAAGTTGATTGCGGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAGCACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTaa                                                                                                                                 >  2:558911/1‑141 (MQ=255)

    taAATGCAAGACGTACTACGATACCGCCTAATTTTTCAACTAATTTAATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTaaaa                                                                                                                               <  2:72302/141‑1 (MQ=255)

      aaTGCAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGAACATTGTTAAAACa                                                                                                                             >  2:319145/1‑141 (MQ=255)

        tGCAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACGCGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACAtt                                                                                                                           >  1:344010/1‑141 (MQ=255)

        tGCAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACAtt                                                                                                                           >  1:323992/1‑141 (MQ=255)

              aCCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTccc                                                                                                                     >  1:470264/1‑141 (MQ=255)

                        aTACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAgg                                                                                                           >  2:480067/1‑141 (MQ=255)

                           ccGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCa                                                                                                        <  2:679218/141‑1 (MQ=255)

                           ccGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCa                                                                                                        <  1:390680/141‑1 (MQ=255)

                           ccGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGAACCATATTCTAGGTCa                                                                                                        <  1:375520/141‑1 (MQ=255)

                             gCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATTATCTGTAATTAACACACGTTGACCTGGTTTAGTTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCCTa                                                                                                      >  2:66562/1‑141 (MQ=255)

                               ctcatttttggtcgaaTTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACt                                                                                                    <  2:686866/127‑1 (MQ=255)

                               cTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACt                                                                                                    >  2:62982/1‑141 (MQ=255)

                               cTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACt                                                                                                    <  2:499822/141‑1 (MQ=255)

                                tAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCCGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTc                                                                                                   <  1:514655/141‑1 (MQ=255)

                                tAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTTTACCATATTCTAGGTCATACTc                                                                                                   >  1:276799/1‑141 (MQ=255)

                                tAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTc                                                                                                   <  1:599799/141‑1 (MQ=255)

                                tAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTc                                                                                                   <  1:96401/141‑1 (MQ=255)

                                  aTTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCAt                                                                                                 >  2:335461/1‑141 (MQ=255)

                                  aTTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCAt                                                                                                 >  2:394985/1‑141 (MQ=255)

                                    ttttCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATaa                                                                                               <  1:62982/141‑1 (MQ=255)

                                     tgggaacgtaTTTTGTTGCTGCTTCAGGCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAAc                                                                                              >  2:756236/10‑141 (MQ=255)

                                           cTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGa                                                                                        >  1:297287/1‑141 (MQ=255)

                                             aaTTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACt                                                                                      >  2:72813/1‑141 (MQ=255)

                                              aTTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACtt                                                                                     <  2:517121/141‑1 (MQ=255)

                                                  tATTGCTGTTTCAATCGGACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACg                                                                                 <  2:634008/141‑1 (MQ=255)

                                                   aTTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTAAATTGCATCTTTGTATGTCGCTAACGGGTTTGGACATGATTCTATGTCATAATCATAACGAATTACttaagga                                                                                >  1:357096/1‑136 (MQ=255)

                                                          ctTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCAAGAGGTAAtt                                                                         >  2:305041/1‑141 (MQ=255)

                                                           ttCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATTCTCATAACGAATGACTTCACGAGGTAAttt                                                                        <  1:755886/141‑1 (MQ=255)

                                                            tCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTc                                                                       <  1:689883/141‑1 (MQ=255)

                                                             cAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTcc                                                                      <  2:276148/141‑1 (MQ=255)

                                                                 cGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCAGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATCACGAATGACTTCACGAGGTAATTTCCcttc                                                                  >  2:480695/1‑141 (MQ=255)

                                                                  gTACCACCAGTAGCTATTAAATCATCTGTAATTAACANACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTNATACTCATAACGAATGACTTCACGAGGTAATTTCCcttct                                                                 <  2:428082/141‑1 (MQ=255)

                                                                  gTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCcttct                                                                 <  2:441074/141‑1 (MQ=255)

                                                                   tACCACCAGTAGCTAATAAATCATCTGTAATTAACACGCGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCcttctt                                                                <  2:344010/141‑1 (MQ=255)

                                                                   tACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTCGGTCCTACTCATAACGTATGACTTCACGAGGTAATTTCCcttctt                                                                >  1:325237/1‑141 (MQ=255)

                                                                   tACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCcttctt                                                                <  2:323992/141‑1 (MQ=255)

                                                                   tACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACATGGATTCCCTGCATCTTTACAAAAAGAAAAAACATTTGTACCATATTCTAGGACATACTCGTAACGAAGGACTGCACGAGGTGATTTCCctgctt                                                                >  1:752052/1‑141 (MQ=255)

                                                                      caccaGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTc                                                             <  1:126860/141‑1 (MQ=255)

                                                                      caccaGTAGCTAATAAAGTATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTc                                                             <  2:113156/141‑1 (MQ=255)

                                                                         caGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCGTAACGGATGACTTCACGAGGTAGTTTCCCTTCTTTTCTaa                                                          >  2:455915/1‑141 (MQ=255)

                                                                           gTAGCTAATAAATCATCTGAAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCTTACTCATAACGAATGACTTCACGAGGTAGTTTTCCTTCTTTTCTAACa                                                        >  1:402865/1‑141 (MQ=255)

                                                                            tAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAg                                                       >  1:725073/1‑141 (MQ=255)

                                                                               cTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATATTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTGCACGAGGTAATTTCCCTTTTTTTCTAACAGGTg                                                    >  1:1339/1‑141 (MQ=255)

                                                                                 aataaATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTCAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCa                                                  >  2:508442/1‑141 (MQ=255)

                                                                                    aaaTCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATCACGCATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAg                                               <  1:521651/141‑1 (MQ=255)

                                                                                              tAATTAACACCCGTTGCCCTGGTTTAATTGCATCTTTGTACATTGGTAAAACATTTGTACCATATTCTAGGTCATTCTCATAACGGACGACTTCAAAAAAGCGTGCCCTTTCTTTTCTAACAGGTGCAAAGCCAATCCCCa                                     <  1:752695/141‑1 (MQ=255)

                                                                                               aaTTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCAt                                    <  1:213057/141‑1 (MQ=255)

                                                                                                aTTAACACACGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGTTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCAtt                                   >  2:307994/1‑141 (MQ=255)

                                                                                                aTTAACACACGTTGACCTGGTGTAATTGCATCTTTATACATTGAAAAAAAATTTGTAACATATTATAAGTCCGACTCATCACGAATGAGTTCAGGAGGAAAGTTACCTTCTTTTCTAACGGGGGCAAAGCCAAACCCCAtt                                   >  2:594734/1‑141 (MQ=255)

                                                                                                aTTAACACAAGTTGACCTGGTTTAATAGCAACTTTGTACAAATATAAAACATTTGTATCTAATTCTAGGTCATACGCATAACGAATGACTTCTCGAGGTAATTTCCCTTCTTTGCTAACAGGTGCAAAGCCAATCCCCAtt                                   >  2:525023/1‑141 (MQ=255)

                                                                                                    acacacGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAACCCCCATTGaaa                               >  2:331755/1‑140 (MQ=255)

                                                                                                     cacacGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCCATCCCCATTGAATa                              >  1:105586/1‑141 (MQ=255)

                                                                                                     cacacGTTGACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTTAATa                              >  1:194247/1‑141 (MQ=255)

                                                                                                             gACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCACTCCCCACTGAATAAGCTACAg                      <  1:394985/141‑1 (MQ=255)

                                                                                                             gACCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAg                      <  1:335461/141‑1 (MQ=255)

                                                                                                              aCCTGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAgg                     <  1:480067/141‑1 (MQ=255)

                                                                                                                cTGTTTTATATGCATCTTTGTACATTGTTAACACATTTGTACCATATTCTTGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCCATCCCCATTGAATAAGCTTCAGGAc                   <  2:466167/141‑1 (MQ=255)

                                                                                                                 tGGTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACa                  >  2:702357/1‑141 (MQ=255)

                                                                                                                   gTTTAATTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCCATCCCCATTGAATAAGCTACAGGACAGc                >  2:764311/1‑141 (MQ=255)

                                                                                                                    tttAAGTGCATCGTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTCCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGcc               <  1:57139/141‑1 (MQ=255)

                                                                                                                       aaTTGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAAt            >  1:470960/1‑141 (MQ=255)

                                                                                                                         ttGCATCTTTGTACATTGTTAACACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGa          <  2:380081/141‑1 (MQ=255)

                                                                                                                         ttGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTCCAGGACAGCCAATGa          >  2:147631/1‑141 (MQ=255)

                                                                                                                          tGCATCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGGGGTAATTTCCCTTTTTTTCTGCTTCTTGCAAAGCAAAACAACGTTCAAAGACCTACAGGACAGCCAATGAt         >  1:745046/1‑141 (MQ=255)

                                                                                                                            cATCTTTGTACATTGTTAAAACATTTGTACCATGTTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTACCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCCTGGAATAAGCTACAGGACGGCCAATGCTaa       >  1:165993/1‑141 (MQ=255)

                                                                                                                              tCTTTGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTCATTTCCCTTCTTTTCTAACATGTGCAAAGCCACTCCCCATTGAATAAGCTCAAGAGAAGCCAATGAaaaaa     >  2:12169/1‑140 (MQ=255)

                                                                                                                                 ttGTACATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCa  <  1:545943/141‑1 (MQ=255)

ATTATAAATGCAATACCTACTACGATACCGCCTAATTTTTCAACTAATTTTATTGCTGCTTCAATCGTACCACCAGTAGCTAATAAATCATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCA  >  CP000730/1744229‑1744498

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A