Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A15 F59 I0 R1	41	74.1	1560052	97.4%	1519490	140.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	CP000730	1,744,454	C→T	100%	G73D (GGC→GAC)	apt ←	adenine phosphoribosyltransferase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	1,744,454	0	C	T	100.0%	225.0 / NA	73	G73D (GGC→GAC)	apt	adenine phosphoribosyltransferase
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (42/31); total (42/31)
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

ATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATC  >  CP000730/1744318‑1744590

aactggcatgaaCAAACGTGGACCTGGTTTGATTGCATCTTTGTGCATTGCTAAAACATTTGTACCAGACTCTAGGTCATACTAATAACGAATGACTTCACGAGCTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAAt                                                                                                                                      <  2:588712/131‑1 (MQ=255)

 tcTTTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATc                                                                                                                                     <  1:471698/141‑1 (MQ=255)

 tcTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTGAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATc                                                                                                                                     >  1:513589/1‑141 (MQ=255)

  ccttAATTAACACCCGTGTACCTGGTTTAATTGCATCTTTGTGCACTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACGTCACGAGGTAATCTCCCTTCTTTTCTAACAGGTGCAAAGTCAAccc                                                                                                                                    <  2:242377/138‑1 (MQ=255)

    ttAATTAACACACGTTGACCTTGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATcccc                                                                                                                                  <  2:127602/140‑1 (MQ=255)

     tAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCa                                                                                                                                 >  2:106780/1‑141 (MQ=255)

         tAACACACGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGa                                                                                                                             <  2:413936/141‑1 (MQ=255)

          aaCACACGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGaa                                                                                                                            <  2:8732/141‑1 (MQ=255)

               ccGTTGGCCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATTACGTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGc                                                                                                                       <  2:209226/140‑1 (MQ=255)

                  ttGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCACTCCCCATTGAATAAGCTAc                                                                                                                    >  1:501077/1‑141 (MQ=255)

                  ttGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAAGCCCCATTGAATAAGCTAc                                                                                                                    <  1:32854/141‑1 (MQ=255)

                               aTTGAATCCTTTTGCATTGTTAAAACATTTGTACCATATTCTAGGCCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATg                                                                                                       <  2:409412/141‑1 (MQ=255)

                                  gCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTTCAGGTCAGCCAATGATa                                                                                                    >  1:449803/1‑141 (MQ=255)

                                            gCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTTTTTCTGTTTCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAAGGATAAAGCCCcgcg                                                                                          >  2:724196/1‑141 (MQ=255)

                                            gCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCAcgcg                                                                                          >  1:669800/1‑141 (MQ=255)

                                                tGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATACAGCCACGCTCttt                                                                                      <  2:91497/141‑2 (MQ=255)

                                                tGTTAAAACATTTGGACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATCTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACTCACTTc                                                                                      <  2:91556/141‑1 (MQ=255)

                                                    aaaaCATTTGTACCATATTCCAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGt                                                                                  <  2:590524/141‑1 (MQ=255)

                                                    aaaaCATTTGGACCATATTCTAGGTCAGACTCATAACGAATGACTTCACGAGGTAATTTCTCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGt                                                                                  >  2:374512/1‑141 (MQ=255)

                                                      aaCATTTGTACCATATTCTATGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTcc                                                                                <  2:723241/141‑1 (MQ=255)

                                                      aaCATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGATGCAGGCCAGCCAATGATAAATACACGCGCttaatctcc                                                                                >  2:532669/1‑134 (MQ=255)

                                                      aaCATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCACTTGCATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGATcc                                                                                >  2:507865/1‑141 (MQ=255)

                                                       aCATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCt                                                                               >  1:229634/1‑141 (MQ=255)

                                                         aTTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGCCCTAc                                                                             >  2:674031/1‑141 (MQ=255)

                                                            tgtgCCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAAc                                                                          <  2:577347/141‑1 (MQ=255)

                                                            tGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAGTATCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACCGCCAATGATAAAGCAACGCGCTTCAGGTCCTACaag                                                                          >  2:569592/1‑140 (MQ=255)

                                                               aCCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGat                                                                       >  1:72653/1‑141 (MQ=255)

                                                                  atatTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATc                                                                    <  1:632700/141‑1 (MQ=255)

                                                                      tCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACa                                                                >  1:550680/1‑141 (MQ=255)

                                                                       cTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAATGCCACGCGCTTCAGGTCCTACAACGATATCAACAt                                                               >  1:583927/1‑141 (MQ=255)

                                                                        tAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACAtc                                                              <  2:742601/141‑1 (MQ=255)

                                                                          ggTCATACTCATACCGAATGACGTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACAtctc                                                            <  2:134920/141‑1 (MQ=255)

                                                                          ggTCATAATCCTAACGGATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACAtctc                                                            >  2:554014/1‑141 (MQ=255)

                                                                             cATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACACGCTTCAGGTCCTACAACGATATAAACATCTCTGt                                                         >  2:606081/1‑141 (MQ=255)

                                                                                 cTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCttt                                                     <  2:539115/141‑1 (MQ=255)

                                                                                    aTAACGAATGACTTCACGAGGTAATTTCGCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGc                                                  <  2:118550/141‑1 (MQ=255)

                                                                                    aTAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGc                                                  >  2:337912/1‑141 (MQ=255)

                                                                                    aTAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCCTTTGc                                                  >  2:337737/1‑141 (MQ=255)

                                                                                        cGAATGACTTCACGCGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTAt                                              <  1:591260/141‑1 (MQ=255)

                                                                                         gAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTAtt                                             >  1:411056/1‑141 (MQ=255)

                                                                                           aTGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCt                                           >  2:497054/1‑141 (MQ=255)

                                                                                             gACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTACTCTAc                                         >  2:563566/1‑141 (MQ=255)

                                                                                               cTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATCTCAACATCTCTGTCTTTTGCGTATTCTACaa                                       >  1:445767/1‑141 (MQ=255)

                                                                                               cTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTTTCTTTTTTGTTTTCTCCat                                       >  1:251043/1‑140 (MQ=255)

                                                                                               cTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACaa                                       >  2:46490/1‑141 (MQ=255)

                                                                                                ttCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAAt                                      >  2:378130/1‑141 (MQ=255)

                                                                                                  cACGAGGTAATTTCCCTTCTTTTCTAACAGTTGCAAAGTCAATCCCCATTGAATAAGCTACATGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTCTCTTTTGCGTATTATATAActt                                    >  1:325403/1‑141 (MQ=255)

                                                                                                    cGAGGTAATTTCCCTGCTTTTCTCACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTa                                  <  2:700103/141‑1 (MQ=255)

                                                                                                     gAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTAt                                 >  2:428426/1‑141 (MQ=255)

                                                                                                        gTAATTCCCCTTGTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACGGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACTATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTg                              <  2:251494/141‑1 (MQ=255)

                                                                                                         tAATTTCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGt                             <  1:679484/141‑1 (MQ=255)

                                                                                                            tttCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGc                          >  1:526203/1‑141 (MQ=255)

                                                                                                              tCCCTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTCGCGTTATCTACAATTTTATCTGTTGCAt                        >  1:101735/1‑141 (MQ=255)

                                                                                                               cccTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATCTTATCTGTTGCATa                       <  2:526460/141‑1 (MQ=255)

                                                                                                               cccTTCTTTGCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATCTTATCTGTTGCATa                       <  2:526467/141‑1 (MQ=255)

                                                                                                                ccTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCTTATTCTACAATTTTATCTGTTGCATAg                      >  1:465701/1‑141 (MQ=255)

                                                                                                                ccTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTTTCTGTTGCATAg                      >  1:465664/1‑141 (MQ=255)

                                                                                                                ccTTCTTTTCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTTTTGCATac                      >  1:291710/1‑140 (MQ=255)

                                                                                                                     ttttCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCata                 <  1:474293/141‑1 (MQ=255)

                                                                                                                      tttCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCttat                >  2:346280/1‑141 (MQ=255)

                                                                                                                      tttCTAACAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGCCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCatat                >  2:488264/1‑141 (MQ=255)

                                                                                                                       ttCTAACCGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATg               <  2:679013/141‑1 (MQ=255)

                                                                                                                         cTAACAAGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAACCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATGTTATCTGTTGCATAGCCATATGCt             >  2:486153/1‑141 (MQ=255)

                                                                                                                           aaCAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTTTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTc           <  1:321350/141‑1 (MQ=255)

                                                                                                                           aaCAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACCATTTTATCTGTTGCATAGCCATATGCTTc           >  1:188351/1‑141 (MQ=255)

                                                                                                                           aaCAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGCCTTTTGCGTATTCTACAATTTTTTCTTTTGCATAGCCATATGCTTc           <  1:491489/141‑1 (MQ=255)

                                                                                                                             cAGGTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTGTTCTACAATTTTGTCTGTTGCATAGCCATTTGCTTCAc         >  1:242731/1‑141 (MQ=255)

                                                                                                                              cggTGCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCCACATCTCTGGCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCAcc        <  1:379571/140‑1 (MQ=255)

                                                                                                                                  gCAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAATGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTGTCTGTGGCATAGCCATATGCTTTACCAtct    >  2:493436/1‑139 (MQ=255)

                                                                                                                                   cAAAGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTAt   <  1:347528/141‑1 (MQ=255)

                                                                                                                                    aaaGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATTTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATc  >  2:556809/1‑141 (MQ=255)

                                                                                                                                    aaaGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATc  >  2:386992/1‑141 (MQ=255)

                                                                                                                                    aaaGTCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGCCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTaac  >  2:707492/1‑139 (MQ=255)

ATCTGTAATTAACACACGTTGACCTGGTTTAATTGCATCTTTGTGCATTGTTAAAACATTTGTACCATATTCTAGGTCATACTCATAACGAATGACTTCACGAGGTAATTTCCCTTCTTTTCTAACAGGTGCAAAGCCAATCCCCATTGAATAAGCTACAGGACAGCCAATGATAAAGCCACGCGCTTCAGGTCCTACAACGATATCAACATCTCTGTCTTTTGCGTATTCTACAATTTTATCTGTTGCATAGCCATATGCTTCACCATTATC  >  CP000730/1744318‑1744590

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A