Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A13 F191 I1 R1
|
32 |
81.5 |
1732862 |
96.8% |
1677410 |
140.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP000730 |
423,247 |
A→G |
V112V (GTA→GTG) |
USA300HOU_0394 → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP000730 | 423,247 | 0 | A | G | 97.5%
| 272.6
/ ‑2.1
| 80 | V112V (GTA→GTG) | USA300HOU_0394 | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (46/31); total (47/33) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.48e-01 |
AGTGTTTTTAATAAAGAAGGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTACCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGTAATAATTATGAATAAAATTAA > CP000730/423110‑423383
|
aGTGTTTTTAATAAAGAAGGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCa > 1:694547/1‑141 (MQ=255)
gagtttAATAAAGAAGGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCaaag < 1:39550/138‑1 (MQ=255)
ttttAATAAAGAAGGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCaaagaa > 1:540380/1‑141 (MQ=255)
ttAATAAAGAAGGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCaaagaaag > 1:656436/1‑141 (MQ=255)
ttAATAAAGAAGGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCaaagaaag > 1:233415/1‑141 (MQ=255)
ttAATAAAGAAGGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCaaagaaag > 1:270779/1‑141 (MQ=255)
taataaAGAAGGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGc < 1:121867/141‑1 (MQ=255)
aagaagGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAg < 1:475911/141‑1 (MQ=255)
gaagGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGAc > 1:414011/1‑141 (MQ=255)
gaagGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGAc > 2:62648/1‑141 (MQ=255)
aaGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTTGACAAACTGa > 2:769458/1‑141 (MQ=255)
aaGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTTGACAAACTGa > 2:769516/1‑141 (MQ=255)
aaGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGa > 1:815502/1‑141 (MQ=255)
aaGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGa < 1:43726/141‑1 (MQ=255)
aaGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGa > 1:815543/1‑141 (MQ=255)
aCGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGa > 2:384083/1‑141 (MQ=255)
cAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACAAAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAATAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGataa < 2:820656/141‑1 (MQ=255)
aaTTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGataat < 2:380155/141‑1 (MQ=255)
aaTTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGataat < 1:736021/141‑1 (MQ=255)
aaTTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGataat < 1:203880/141‑1 (MQ=255)
aTGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCAt > 1:703410/1‑141 (MQ=255)
aTGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCAt < 1:195601/141‑1 (MQ=255)
gTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGc > 1:606748/1‑141 (MQ=255)
aCATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACa < 1:754537/141‑1 (MQ=255)
tGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTACCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGtt > 2:837185/1‑141 (MQ=255)
aTGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCa < 2:435378/141‑1 (MQ=255)
aTGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCa < 2:435419/141‑1 (MQ=255)
aTGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCa > 1:534711/1‑141 (MQ=255)
aTGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCa < 1:274596/141‑1 (MQ=255)
aTGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCa < 1:298366/141‑1 (MQ=255)
aTGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCa < 2:494491/141‑1 (MQ=255)
gTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCAtt > 1:852976/1‑141 (MQ=255)
ttAAACCGCATATATACTTGAAAAATACACATAAAGGTCATAATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCAttt < 2:379914/141‑1 (MQ=255)
tAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTta < 2:564799/141‑1 (MQ=255)
tAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTta > 1:197306/1‑141 (MQ=255)
aaCCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTtata > 1:564556/1‑141 (MQ=255)
ccGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATaaa < 1:157670/141‑1 (MQ=255)
cGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTATTGACGAAGTTGACAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATaaaa > 2:162226/1‑141 (MQ=255)
cGCATAGATACCTGAAAATTACACATAAAGGACATCATGTAGAACCTTTTGAAGAAGCAGAAAAGGAAGAAGTGCCAAAGACAGCATTAGACAAACTGAGTCGATCATAGCATGCTTATATTACATGGTTCATTTATaaaa > 2:644159/1‑141 (MQ=255)
gCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAg > 2:156225/1‑141 (MQ=255)
cATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAgg > 2:241665/1‑141 (MQ=255)
gAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTAGATTACATGGTTCATTTATAAAAGGAGTacgaacga < 1:754889/141‑1 (MQ=255)
aaaTTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGaaa < 2:562403/141‑1 (MQ=255)
aaaTTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGaaa < 2:562479/141‑1 (MQ=255)
aaaTTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTACCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGaaa < 2:279714/141‑1 (MQ=255)
acacATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAAc > 1:234553/1‑141 (MQ=255)
acacATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTGGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAAc > 1:459828/1‑141 (MQ=255)
caTAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCa > 2:390337/1‑141 (MQ=255)
caTAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCa > 2:348965/1‑141 (MQ=255)
aaaGGTCATCATGTAGAAACTTTTTTTTTTTTTTTAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATCTTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGa > 2:308762/1‑141 (MQ=255)
aaaGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGa > 1:125074/1‑141 (MQ=255)
ggTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGa > 1:712797/1‑141 (MQ=255)
gTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGAt < 2:841784/141‑1 (MQ=255)
tcatcaTGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGAtt > 1:56526/1‑141 (MQ=255)
atcatGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTaa > 2:742440/1‑141 (MQ=255)
gTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTaa > 1:37311/1‑141 (MQ=255)
tAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTaaa > 1:457302/1‑141 (MQ=255)
aGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTaaaa > 1:4321/1‑141 (MQ=255)
cTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATAtt > 2:289388/1‑141 (MQ=255)
cTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATAtt > 1:495584/1‑141 (MQ=255)
cTTTTGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATAtt < 2:287243/141‑1 (MQ=255)
tttGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTg < 1:776821/141‑1 (MQ=255)
tttGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTg < 1:776794/141‑1 (MQ=255)
ttGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGt < 2:5490/141‑1 (MQ=255)
ttGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGt < 1:422096/141‑1 (MQ=255)
ttGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGt > 1:728176/1‑141 (MQ=255)
ttGAAGAAGTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGt > 1:296644/1‑141 (MQ=255)
agaagTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGtaata > 1:196198/1‑141 (MQ=255)
gaagTTGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGtaataa < 1:602945/141‑1 (MQ=255)
ttGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGTAATAATTAt < 1:376367/141‑1 (MQ=255)
ttGAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGTAATAATTAt > 1:94085/1‑141 (MQ=255)
tGAAAAGGAAGAAGATCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGTAATAATTATg < 2:391573/141‑1 (MQ=255)
gAAAAGGAAGAAGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGTAATAATTATGa > 2:800089/1‑141 (MQ=255)
gaagaaGTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGTAATAATTATGAATaaaa > 1:419261/1‑141 (MQ=255)
aagaagTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACAATTAATTTAAAAATATTTGTAATAATTATGAATAAAAt < 2:630940/141‑1 (MQ=255)
gaagTGCCAAAGAAAGCCTTAGACAAACTGAGACGATAATAGCATGCGTATATTACATGGATCATTTATAAAAGGAGTACGAACGAAAGTAACACAAGAAGAATAAATTAAAAATAAACATAATAAATATGAAAAAAAATa > 2:831748/1‑141 (MQ=255)
gaagTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGTAATAATTATGAATAAAATTa > 2:697145/1‑141 (MQ=255)
aagTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGTAATAATTATGAATAAAATTaa > 1:238235/1‑141 (MQ=255)
aagTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGTAATAATTATGAATAAAATTaa < 1:266424/141‑1 (MQ=255)
aagTGCCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGTAATAATTATGAATAAAATTaa > 2:624397/1‑141 (MQ=255)
|
AGTGTTTTTAATAAAGAAGGGAAAGAGACGCAATTAATGTATACTGCTACATTTGATGTTAAACCGCATAGATACTTGAAAATTACACATAAAGGTCATCATGTAGAAACTTTTGAAGAAGTTGAAAAGGAAGAAGTACCAAAGAAAGCATTAGACAAACTGAGTCGATAATAGCATGCTTATATTACATGGTTCATTTATAAAAGGAGTACGAACGAAAGTAACGCATGACGATTAATTTAAAAATATTTGTAATAATTATGAATAAAATTAA > CP000730/423110‑423383
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
