Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A23 F171 I0 R1 85 107.7 2387914 93.1% 2223147 139.7

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 2,361,590 C→T 48.5% R239H (CGT→CAT)  secY1 ← Sec family Type I general secretory pathway preprotein translocase SecY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0007302,361,5900CT48.5% 1.4 / 141.0 95R239H (CGT→CAT) secY1Sec family Type I general secretory pathway preprotein translocase SecY
Reads supporting (aligned to +/- strand):  ref base C (30/19);  new base T (28/18);  total (58/37)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.18e-01

TGTTCTAGGCAGTAAGAAGAACGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGTCCAAATTGAATTAGACTGGCTGG  >  CP000730/2361451‑2361729
                                                                                                                                            |                                                                                                                                           
tGTTCTAGGCAGTAAGAAGAACGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACg                                                                                                                                            >  1:171805/1‑141 (MQ=255)
 gTTCTAGGCAGTAAGAAGAACGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGa                                                                                                                                           >  2:1156021/1‑141 (MQ=255)
 gTTCTAGGCAGTAAGAAGAACGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGa                                                                                                                                           <  1:1098941/141‑1 (MQ=255)
   tCTAGGCAGTAAGAAGAACGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAAc                                                                                                                                         <  1:291140/141‑1 (MQ=255)
     tAGGCAGTAAGAAGAACGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACgg                                                                                                                                       <  1:1093310/141‑1 (MQ=255)
      aGGCAGTAAGAAGAACGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGc                                                                                                                                      <  1:305064/141‑1 (MQ=255)
         cAGTAAGAAGAACGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTc                                                                                                                                   <  1:448640/141‑1 (MQ=255)
             aagaagAACGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGt                                                                                                                               <  1:670934/141‑1 (MQ=255)
              agaagaACGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGACTTTTACGAACGGCTTCAAGTa                                                                                                                              >  2:1007998/1‑141 (MQ=255)
               gaagagCGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTGATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTAc                                                                                                                             <  2:129306/141‑1 (MQ=255)
               gaagaaCGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTAc                                                                                                                             >  2:433709/1‑141 (MQ=255)
               gaagaaCGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTAc                                                                                                                             <  2:385502/141‑1 (MQ=255)
                aagaaCGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACa                                                                                                                            <  2:1167554/141‑1 (MQ=255)
                 agaaCGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACAt                                                                                                                           <  1:66136/141‑1 (MQ=255)
                  gaaCGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCACTTTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACAt                                                                                                                           <  1:874639/141‑1 (MQ=255)
                    aCGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATaaa                                                                                                                        >  2:678781/1‑141 (MQ=255)
                      gCCATTGCAAAGATTACAGGAATAACACCGGCTGCGTTCAC‑TTTTAAAGGTAGATAAGTTGACTGTGAAACTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATa                                                                                                                      <  1:596841/141‑1 (MQ=255)
                      gCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATa                                                                                                                      <  2:76716/141‑1 (MQ=255)
                        cATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGc                                                                                                                    >  2:803124/1‑141 (MQ=255)
                        cATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGc                                                                                                                    >  2:422614/1‑141 (MQ=255)
                         aTTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCa                                                                                                                   >  2:291823/1‑141 (MQ=255)
                           tGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCAcc                                                                                                                 <  1:1149515/141‑1 (MQ=255)
                                agagTACAGGAATAACACCGGCTGAGTCCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAACCTTTGAGCAGTTTGTTTCTTAGCATAATGAATCGGCATTCTATGCACGGCTTCAAGTACATAAATAGCACCCACAg                                                                                                            >  1:893335/1‑141 (MQ=255)
                                 gATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGt                                                                                                           >  1:49282/1‑141 (MQ=255)
                                   ttACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTa                                                                                                         <  2:948181/141‑1 (MQ=255)
                                    tACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTaa                                                                                                        <  2:471251/141‑1 (MQ=255)
                                     aCAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAAt                                                                                                       >  1:1036162/1‑141 (MQ=255)
                                       aGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAg                                                                                                     >  1:462595/1‑141 (MQ=255)
                                       aGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAg                                                                                                     >  1:1084501/1‑141 (MQ=255)
                                       aGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAg                                                                                                     >  2:1105507/1‑141 (MQ=255)
                                       aGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAg                                                                                                     >  1:127958/1‑141 (MQ=255)
                                       aGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAg                                                                                                     <  1:1003928/141‑1 (MQ=255)
                                       aGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAg                                                                                                     >  2:291921/1‑141 (MQ=255)
                                               cacCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTg                                                                                             <  1:513587/141‑1 (MQ=255)
                                               cacCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTg                                                                                             <  2:567048/141‑1 (MQ=255)
                                                acCGGCTGAGTTCGC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGa                                                                                            >  1:736475/1‑141 (MQ=255)
                                                acCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGa                                                                                            >  1:504887/1‑141 (MQ=255)
                                                acCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGa                                                                                            >  2:493648/1‑141 (MQ=255)
                                                acCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCGGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGa                                                                                            >  2:727676/1‑141 (MQ=255)
                                                  cGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGaca                                                                                          <  2:757467/141‑1 (MQ=255)
                                                  cGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGaca                                                                                          >  2:77114/1‑141 (MQ=255)
                                                        aGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTaaaa                                                                                    >  1:726743/1‑141 (MQ=255)
                                                         gTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAg                                                                                   >  2:89255/1‑141 (MQ=255)
                                                         gTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAg                                                                                   >  2:147569/1‑141 (MQ=255)
                                                           tCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTc                                                                                 <  2:390294/141‑1 (MQ=255)
                                                           tCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTc                                                                                 >  1:160748/1‑141 (MQ=255)
                                                            cAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTcc                                                                                >  1:561006/1‑141 (MQ=255)
                                                              c‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTa                                                                              >  2:326139/1‑141 (MQ=255)
                                                                ttttAAAGGTAAATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGAATATTGAAACGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTaa                                                                             <  1:707638/141‑1 (MQ=255)
                                                                 tttAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAAt                                                                            <  2:306341/141‑1 (MQ=255)
                                                                   tAAAGGTTGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATAc                                                                          >  1:945935/1‑141 (MQ=255)
                                                                    aaaGGTAGATAAGTTGCCTGTGAACCTAGCGAATTATCATTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACt                                                                         >  2:950527/1‑141 (MQ=255)
                                                                      aGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACttt                                                                       >  2:348074/1‑141 (MQ=255)
                                                                      aGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCCAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACttt                                                                       >  1:78557/1‑141 (MQ=255)
                                                                       ggTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTc                                                                      >  1:894945/1‑141 (MQ=255)
                                                                         tAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCaa                                                                    >  2:659140/1‑141 (MQ=255)
                                                                               aGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGc                                                              <  2:1150771/141‑1 (MQ=255)
                                                                                 ttGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTa                                                            >  1:210563/1‑141 (MQ=255)
                                                                                 ttGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTa                                                            >  2:1135485/1‑141 (MQ=255)
                                                                                 ttGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTa                                                            >  1:221039/1‑141 (MQ=255)
                                                                                   gCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAat                                                          >  1:757954/1‑141 (MQ=255)
                                                                                    ccTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAatg                                                         >  1:797041/1‑141 (MQ=255)
                                                                                     cTGTGAACCTAATCTTTTAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTGCGAACGGGGTCAAGTGCATGAATAGTACCTACAGTTAATAGTAGCAGGGGCACTAAAAGTCCTAATACTTTCAACCATGCTatttt                                                        >  1:894215/1‑137 (MQ=255)
                                                                                     cTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAatga                                                        <  1:1077689/141‑1 (MQ=255)
                                                                                      tgtgAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAG‑TAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAatgatg                                                      <  2:1002594/141‑1 (MQ=255)
                                                                                       gtgAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAatgatg                                                      >  2:63164/1‑141 (MQ=255)
                                                                                         gAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTa                                                    >  2:466880/1‑141 (MQ=255)
                                                                                         ataattagtCTTTGATGAGGTTGGTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTa                                                    <  2:643945/133‑1 (MQ=255)
                                                                                          acccTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCCATAGGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTAt                                                   <  1:21515/139‑1 (MQ=255)
                                                                                          aaCCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTAt                                                   <  2:678026/141‑1 (MQ=255)
                                                                                             cTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTAtctt                                                <  1:518006/141‑1 (MQ=255)
                                                                                                aTCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTa                                                                                                   >  1:275684/1‑87 (MQ=255)
                                                                                                aTCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTa                                                                                                   <  2:275684/87‑1 (MQ=255)
                                                                                                  cTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGc                                           <  1:1124382/141‑1 (MQ=255)
                                                                                                   tttGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGcc                                          <  1:545237/141‑1 (MQ=255)
                                                                                                     tGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCa                                        >  1:1120632/1‑141 (MQ=255)
                                                                                                       aGCAGTTTGTTTCTTAGCATATTGAATTGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGGGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTGTCTTCTTGCCCaac                                      >  1:509841/1‑141 (MQ=255)
                                                                                                          aGTTTGTTTCTTAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCaacgaa                                   <  2:357606/141‑1 (MQ=255)
                                                                                                              tgtttCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCa                               >  1:432110/1‑141 (MQ=255)
                                                                                                              tgtttCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCa                               >  1:670694/1‑141 (MQ=255)
                                                                                                                tttCTTAGCATATTGGATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGt                             <  1:990560/141‑1 (MQ=255)
                                                                                                                tttCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGt                             <  1:1054364/141‑1 (MQ=255)
                                                                                                                  tCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGttt                           >  1:313514/1‑141 (MQ=255)
                                                                                                                    ttAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCAAACCCGCCAACGAACGCAGTTTGt                         >  1:611595/1‑141 (MQ=255)
                                                                                                                    ttAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGt                         >  1:530753/1‑141 (MQ=255)
                                                                                                                    ttAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGt                         >  1:433199/1‑141 (MQ=255)
                                                                                                                     tAGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGTc                        >  2:65505/1‑141 (MQ=255)
                                                                                                                      aGCATATTGAATCGGAATTTTATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGTcc                       >  1:276827/1‑141 (MQ=255)
                                                                                                                        cATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGTCCaa                     >  1:835628/1‑141 (MQ=255)
                                                                                                                            ttGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGTCCAAATTg                 >  1:1139049/1‑141 (MQ=255)
                                                                                                                            ttGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGTCCAAATTg                 >  1:915157/1‑141 (MQ=255)
                                                                                                                                  cGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGTCCAAATTGAATTAg           >  1:764382/1‑141 (MQ=255)
                                                                                                                                    gAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGTTCAAATTGAATTAGAc         >  1:1151764/1‑141 (MQ=255)
                                                                                                                                        tttATGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGTCCAAATTGAATTAGActggc     >  2:483853/1‑141 (MQ=255)
                                                                                                                                           aCGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGTCCAAATTGAATTAGActggctgg  <  2:736039/141‑1 (MQ=255)
                                                                                                                                            |                                                                                                                                           
TGTTCTAGGCAGTAAGAAGAACGCCATTGCAAAGATTACAGGAATAACACCGGCTGAGTTCAC‑TTTTAAAGGTAGATAAGTTGCCTGTGAACCTAATCTTTGAGCAGTTTGTTTCTTAGCATATTGAATCGGAATTTTACGAACGGCTTCAAGTACATAAATAGCACCTACAGTTAATAGTATCAGTGACACTAAAAGTCCTAATACTTTCAACCATGCTAATGATGTATCTTCTTGCCCAACGAACGCAGTTTGTCCAAATTGAATTAGACTGGCTGG  >  CP000730/2361451‑2361729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A