Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A7 F21 I1 R1	21	59.1	1265912	91.6%	1159575	147.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP000730	2,352,815	G→A	A92V (GCA→GTA)	rpsI ←	ribosomal protein S9

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP000730	2,352,815	0	G	A	100.0%	179.9 / NA	62	A92V (GCA→GTA)	rpsI	ribosomal protein S9
Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (31/31); total (31/31)

TTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTGCTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTCTAAAATTA  >  CP000730/2352670‑2352953

tttGTATATATCGTCGGACAATTAACGTTTTGAGAAGTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTACAGAACCTCTGTATTCAGGATCTACt                                                                                                                                          >  1:399297/1‑148 (MQ=255)

  tggatatatCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTc                                                                                                                                        <  2:468042/145‑1 (MQ=255)

  tGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTc                                                                                                                                        >  1:514930/1‑148 (MQ=255)

  tGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACATGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGAGCTACTTc                                                                                                                                        >  1:134934/1‑148 (MQ=255)

    tatataTCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCTTGTTCAAGAACCTCTGTATTCAGGATCTACTTCta                                                                                                                                      >  1:500209/1‑148 (MQ=255)

    tatataTCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCta                                                                                                                                      <  1:70794/148‑1 (MQ=255)

     atatatCGTCCGAAAATTAACGGTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCtaa                                                                                                                                     <  2:200198/148‑1 (MQ=255)

      tatatCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTCCGTTCTTCCATACGTGGGTCACGAGTTAATAATGCAGCGCGTCTTCAAGGCGCACTGTCTTCAGGGTCTACTTCtaat                                                                                                                                    >  1:142744/1‑148 (MQ=21)

        gatCGGCCGACGATTAACCTTTTGAGAAGTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCtaataa                                                                                                                                  <  2:119757/147‑1 (MQ=38)

         atCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACATCTGTATTCAGGATCTACTTCTaataat                                                                                                                                 >  2:512643/1‑148 (MQ=255)

          tCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATg                                                                                                                                >  1:596051/1‑148 (MQ=255)

          tCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTATAATAATg                                                                                                                                >  1:584159/1‑148 (MQ=255)

           cGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAGCCTTTTTATTCAGGATTTACTTCTAATAATGc                                                                                                                               >  2:53411/1‑148 (MQ=37)

           cGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGc                                                                                                                               >  2:290149/1‑148 (MQ=255)

            gTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCa                                                                                                                              >  2:364546/1‑148 (MQ=255)

             tCCGTCATTTAACGTCTTGAGAATTGAGGTGAACGCCGAGCTGCTTTAAGACCTGGTTTTTTAAGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCAc                                                                                                                             <  2:399758/148‑1 (MQ=255)

                   aaTTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGa                                                                                                                       <  2:303988/148‑1 (MQ=255)

                          gTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCCCGAGCGATTCCGTg                                                                                                                >  1:595797/1‑148 (MQ=255)

                                 gaATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATa                                                                                                         >  1:278476/1‑148 (MQ=255)

                                 gaATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTAGTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATa                                                                                                         >  1:83026/1‑148 (MQ=255)

                                   aTTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAATACTCCAGCGCGTTTTACAGAACCTCTGTCTTCAGCATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATagc                                                                                                       >  1:283076/1‑148 (MQ=255)

                                           gAACGACCAGCTGCTTCAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATCCAGCATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATagcttgagctt                                                                                               <  1:332514/148‑1 (MQ=255)

                                               gacgaGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTcc                                                                                           <  2:423843/148‑1 (MQ=255)

                                                acgaGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCa                                                                                          >  1:104711/1‑148 (MQ=255)

                                                acgaGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCa                                                                                          <  1:16801/148‑1 (MQ=255)

                                                acgaGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCa                                                                                          <  2:585588/148‑1 (MQ=255)

                                                     ctgctTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGaa                                                                                     <  1:549266/148‑1 (MQ=255)

                                                      tgctTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACCAGTAAGTAATCCAGCGCTTTTTGAAGAACCTCTGTATTCAGGATCGAGTTCTATTAATTCACGAGCGATTCCGCGAAGGTTAGCTTAAGCCAGCCCAGTCaaa                                                                                    >  2:231769/1‑148 (MQ=255)

                                                         tttAAGCTCTGGTGTCTCACGTTCTTTCATACGGGCGCTACGAGTAAGTAATCCAGCGCGTTTTAAAGGTCTTGTGCACTCAGGATCTACTTCTAATTATGCACGCGCGATTCCGTGACGGTTAGCTTGTGCTTGTCCAGTgttaccg                                                                                 <  2:67518/148‑7 (MQ=255)

                                                         tttAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAacca                                                                                 <  2:156793/148‑1 (MQ=255)

                                                             aGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCCGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATGGCTTGAGCTTGTCCACTGGAaccacgac                                                                             >  1:567243/1‑148 (MQ=255)

                                                             aGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCACGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAaccaccac                                                                             <  2:465646/148‑1 (MQ=255)

                                                                ccTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCAt                                                                          >  2:460591/1‑148 (MQ=255)

                                                                ccTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCAt                                                                          <  1:369425/148‑1 (MQ=255)

                                                                      tttttACGTTCGTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGt                                                                    <  1:562490/148‑1 (MQ=255)

                                                                         ttACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTaa                                                                 <  2:198697/148‑1 (MQ=255)

                                                                            cGTTCTTTCATACGTGGGTCACGAGTACGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTa                                                              >  1:345867/1‑148 (MQ=255)

                                                                            cGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGCTCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTACCTa                                                              >  1:124993/1‑148 (MQ=255)

                                                                            cGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTa                                                              >  1:287138/1‑148 (MQ=255)

                                                                              ttCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTaaa                                                            <  1:364546/148‑1 (MQ=255)

                                                                              ttCTGTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTaaa                                                            <  2:110519/148‑1 (MQ=255)

                                                                                  ttCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAAcat                                                        >  1:597140/1‑148 (MQ=255)

                                                                                   tCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAAcatc                                                       <  2:562806/148‑1 (MQ=255)

                                                                                        cGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGCCGAATCGCTTGAGCTTGTCCAGTGAAACCACCACCCTGAACGTTAACAAAACCAGCATAGt                                                  >  2:312139/1‑148 (MQ=255)

                                                                                         gTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGtt                                                 >  2:42618/1‑148 (MQ=255)

                                                                                          tGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTa                                                <  2:67117/148‑1 (MQ=255)

                                                                                          ggggTCACGAGTAATTAACCCAGCGCGTTTTAAAGAACCTCGGAATTCAGGATCTACTTCTAACAGAGCACGCGCGATTCCGTGACGTCTAGCGTCAGCTTGTCCGGTGAAACCACCACCCTGAACGTTAACTAAAACAGCATAGTTa                                                <  2:327614/147‑1 (MQ=255)

                                                                                           gggTCACGAGTAAGTAAGCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTAc                                               <  2:154257/148‑1 (MQ=255)

                                                                                            ggTCACTAGTAAGTAACCCAGCCCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAACAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATCGTTAcc                                              <  1:26560/148‑1 (MQ=255)

                                                                                             gTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCt                                             <  1:42618/148‑1 (MQ=255)

                                                                                                         taaTCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGATCGATTCCGTGACGGATAGCTTGATCTTGTCCAGTGAAACGACCACCATGAACGTTAACTAAAACATCAGAGTTACCtatcacttcaatt                                 >  2:30362/1‑136 (MQ=255)

                                                                                                         taaTCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCCTAGTTACCTTTAGTATCAGtt                                 >  2:220761/1‑148 (MQ=255)

                                                                                                          aaTCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTa                                >  1:346301/1‑148 (MQ=255)

                                                                                                            tCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACa                              >  1:593744/1‑148 (MQ=255)

                                                                                                                      tttAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAtggtt                    <  1:368642/148‑1 (MQ=255)

                                                                                                                       ttAAAGAACCTCTGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAAtggttg                   <  2:532712/148‑1 (MQ=255)

                                                                                                                          aaaaaCCTCTGTATTCAGGATCTACTTCTAATAATGCACTCGCGATGCAGTGACGGATAGCTTGAGCTGTTCCAGTGAAACCACCACCATGAACGTTAACTAAACCATCCTAGTTACCTGTCGTTTCCGTTACACGAAAcggttcgct                >  2:70769/4‑144 (MQ=255)

                                                                                                                          aaGAACCTCTGTATTCAGTATCTACTTCTAATAAGGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACAGCATAGTTACCTTTAGTTTCAGTTACATCAAATggttggtt                <  2:296221/148‑1 (MQ=255)

                                                                                                                               ccTCTGTATTCAGGATCTACTTCTAATAATGCAAGAGCGATTCCGTGACGGATAGCTTGAGCTTGTAAAGTGAGACCGCCAACAGCAACTGTAACGAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGt           <  1:460591/148‑1 (MQ=255)

                                                                                                                                ctctGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTc          <  1:176135/148‑1 (MQ=255)

                                                                                                                                 tctGTATTCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTCt         <  2:399297/148‑1 (MQ=255)

                                                                                                                                        tCAGGATCTACTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTCTACAATTa  >  2:87724/1‑148 (MQ=255)

TTTGTATATATCGTCCGACAATTAACGTTTTGAGAATTGAGGTGAACGACGAGCTGCTTTAAGACCTGGTTTTTTACGTTCTTTCATACGTGGGTCACGAGTAAGTAATCCAGCGCGTTTTAAAGAACCTCTGTATTCAGGATCTGCTTCTAATAATGCACGAGCGATTCCGTGACGGATAGCTTGAGCTTGTCCAGTGAAACCACCACCATGAACGTTAACTAAAACATCATAGTTACCTTTAGTTTCAGTTACATCAAATGGTTGGTTTAAGTCTAAAATTA  >  CP000730/2352670‑2352953

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 13 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A