Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F59 I1 R1
|
27 |
28.6 |
614024 |
91.3% |
560603 |
148.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP000730 |
2,642,589 |
G→A |
N18N (AAC→AAT) |
ydaT ← |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP000730 | 2,642,589 | 0 | G | A | 100.0%
| 75.7
/ NA
| 24 | N18N (AAC→AAT) | ydaT | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (15/9); total (15/9) |
GAACAACATCTTTTTCAAGATATCCTTCTTTTAACATTGCATTCGCAATTTCTATCGCTTTTTGCCGTTTAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATGTTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCATAATAACTTCAGACAAACGTTAGTCTGACCTGATAAATATTTAATTTTAAACGTTCTTGTCTCTCTC > CP000730/2642447‑2642729
|
gAACAACATCTTTTTCAAGATATCCTTCTTTTAACATTGCATTCGCAATTTCTATCGCTTTTTGCCGTTTAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATtata < 1:34199/148‑1 (MQ=255)
acaacaTCTTTTTCAAGATATCCTTCTTTTAACATTGCATTCGCAATTTCTATCGCTTTTTGCCGTTTAATTACTTCAAATTCTTTCCATTTTTCTTTTTTTCCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAAt > 2:76467/1‑148 (MQ=255)
tCTTTTTCAAGATATCCTTCTTTTAACATTGCATTCGCAATTTCTATCGCTTTTTGCCGTTTAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGt > 1:112442/1‑148 (MQ=255)
tCTTTTTCAAGATATCCTTCTTTTAACATTGCATTCGCAATTTCTATCGCTTTTTGCCGTTTAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGt > 1:242036/1‑148 (MQ=255)
tAACATTGCATTCGCAATTTCTATCGCTTTTTGCCGTTTAATTACTTCAAATTCTTTCCATTTTTTGGGGTAACTTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATaaaa > 2:176837/1‑148 (MQ=255)
tAACATTGCATTCGCAATTTCTATCGCTTTTTGCCGTTTAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTGATGTTATATACCACCATAATTATaaaa > 1:294130/1‑148 (MQ=255)
tGCATTCGCAATTTCTATCGCTTTTTTTCGTTTAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAAc > 2:110661/1‑148 (MQ=255)
aTTCGCAATTTCTATCGCTTTTTGCCGTTTAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTGATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACata > 2:289118/1‑148 (MQ=255)
cGCAATTTCTATCGCTTTTTGCCGTTTAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTa < 2:30671/148‑1 (MQ=255)
gCTTTTTGCCGTTTAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACAttttttt > 2:205292/1‑148 (MQ=255)
tttttGCCGTTTAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCTCTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAg > 1:42378/1‑148 (MQ=255)
tAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCat < 1:211408/148‑1 (MQ=255)
aCTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCAtaataa > 1:58881/1‑148 (MQ=255)
aTTTTTCTGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTATACTCCCGTCATAATAACTTCAGACAAACGTTa < 1:95181/148‑1 (MQ=255)
gggTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCATAATAACTTCAGACAAACGTTAGTCTGAcc < 1:279418/148‑1 (MQ=255)
gTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCATAATAACTTCAGACAAACGTTAGTCTGACCTg < 1:189512/148‑1 (MQ=255)
gTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCATAATAACTTCAGACAAACGTTAGTCTGACCTg < 2:232309/148‑1 (MQ=255)
tGTAAAGGGCATTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCATAATAACTTCAGACAAACGTTAGTCTGACCTGATAAATATTTaa > 2:274495/1‑148 (MQ=255)
aTTTCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCATAATAACTTCAGACAAACGTTAGTCTGACCTGATAAATATTTAATTTTAAACGt < 1:76467/148‑1 (MQ=255)
tttCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCATAATAACTTCAGACAAACGTTAGTTTGACCTGATAAATATTTAATTTTAAACGtt > 2:210575/1‑148 (MQ=255)
tttCCTTAACCTCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCATAATAACTTCAGACAAACGTTAGTCTGACCTGATAAATATTTAATTTTAAACGtt > 1:158721/1‑148 (MQ=255)
tCCAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCATAATAACTTCAGACAAACGTTAGTCTGACCTGATAAATATTTAATTTTAAACGTTCTTGtctctct > 2:70248/1‑148 (MQ=255)
ccAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCATAATAACTTCAGACAAACGTTAGTCTGACCTGATAAATATTTAATTTTAAACGTTCTTGtctctctc < 2:42378/148‑1 (MQ=255)
ccAATATATTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTACCGTCCTAATAAATTCAGACACTCGTTAGTATGACCTGATAAATATTTAATTTTACACGTTCTTGtctctctc > 1:275021/1‑148 (MQ=255)
|
GAACAACATCTTTTTCAAGATATCCTTCTTTTAACATTGCATTCGCAATTTCTATCGCTTTTTGCCGTTTAATTACTTCAAATTCTTTCCATTTTTCGGGGTAACCTTTCATTGTAAAGGGCATTTCCTTAACCTCCAATATGTTATAATTCATGTTATATACCACCATAATTATAAAATGAAACATATTAAACACATTTTTTTAGACTCCCGTCATAATAACTTCAGACAAACGTTAGTCTGACCTGATAAATATTTAATTTTAAACGTTCTTGTCTCTCTC > CP000730/2642447‑2642729
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
