Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A23 F171 I0 R2 49 45.2 1012374 92.5% 936445 139.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP000730 110,904 G→T 51.7% D255Y (GAT→TAT)  USA300HOU_0109 → staphylococcal tandem lipoprotein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP000730110,9040GT51.7% 1.7 / 140.9 87D255Y (GAT→TAT) USA300HOU_0109staphylococcal tandem lipoprotein
Reads supporting (aligned to +/- strand):  ref base G (22/20);  new base T (25/20);  total (47/40)
Fisher's exact test for biased strand distribution p-value = 8.31e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCCAAAGTTATTGTTAAAAGGTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCACTGCTGGTTGTGGCATG  >  CP000730/110768‑111044
                                                                                                                                          |                                                                                                                                            
tacAAAGTTATTGTTAAAAGGTTAAAGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTCAGTGATAGCTAAAAAAAAAAAAAAAGCGGAGATGt                                                                                                                                          <  2:203805/139‑1 (MQ=21)
 ccAAAGTTATTGTTAAAAGGTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGta                                                                                                                                         <  2:196812/141‑1 (MQ=255)
     aGTTATTGTTAAAAGGTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAAATATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGtata                                                                                                                                       >  2:477419/1‑141 (MQ=255)
      gTTATTGTTAAAAGGTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATc                                                                                                                                    <  2:220045/141‑1 (MQ=255)
        tATTGTTAAAAGTTTCAGGGAATTTAAAAGGCTCATAAGTTGGATATCATGATATTGTATTTACGTTTGTAGAGAAAAAAGAAGAAG‑‑ATATATACTTTAGTGATAGTTTAGATTATAAAAAAAGCGGATATGTATAATCAt                                                                                                                                  <  2:16283/141‑1 (MQ=25)
         aTTGTTAAAAGGTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATg                                                                                                                                 <  2:142780/141‑1 (MQ=255)
           tGTTAAAAGGTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGc                                                                                                                               <  1:470637/141‑1 (MQ=255)
            gTTAAAAGGTTCAGGGAATTTAAAAGGCTCATCTGTTGGATATAAAGATATTGAATTTAGGTTTGTAGGGAAAAAAGAAGAAA‑‑ATATATACTTGAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCt                                                                                                                              >  2:200795/1‑141 (MQ=255)
            gTTAAAAGGTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCt                                                                                                                              >  2:295973/1‑141 (MQ=255)
                  aGGTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCa                                                                                                                        >  1:3091/1‑141 (MQ=255)
                   ggTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAg                                                                                                                       >  1:178998/1‑141 (MQ=255)
                   ggTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAg                                                                                                                       <  1:316740/141‑1 (MQ=255)
                   ggTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGAATATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAg                                                                                                                       <  2:192762/141‑1 (MQ=255)
                   ggTTCAGGGAATTTAAAAGGCTAATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAAAAAAAAAAAAAAGCGGATATGTATAATCATGGCTCAATCAg                                                                                                                       <  2:212834/141‑1 (MQ=21)
                      tCATGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAat                                                                                                                    <  2:4270/141‑1 (MQ=255)
                      tCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAat                                                                                                                    >  1:491783/1‑141 (MQ=255)
                      tCAGGGAAGTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAat                                                                                                                    >  2:225178/1‑141 (MQ=255)
                        aGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAatat                                                                                                                  >  1:159843/1‑141 (MQ=255)
                        aGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCAAAAAAAAAAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAatat                                                                                                                  <  2:392776/141‑1 (MQ=21)
                            aaTTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGaaa                                                                                                              <  1:201295/141‑1 (MQ=255)
                            aaTTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGaaa                                                                                                              <  1:391000/141‑1 (MQ=255)
                            aaTTTAAAAGGCTCATAAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGaaa                                                                                                              <  2:64652/141‑1 (MQ=255)
                              tttAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAaatc                                                                                                            <  1:184656/141‑1 (MQ=255)
                              tttAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAaatc                                                                                                            >  2:498243/1‑141 (MQ=255)
                              tttAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTACAATCAGTGCTAAATCAGAATATGAaatc                                                                                                            >  2:317151/1‑141 (MQ=255)
                                 aaaaGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAaatcaat                                                                                                         >  1:142938/1‑141 (MQ=255)
                                  aaaGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAaatcaatc                                                                                                        >  2:44242/1‑141 (MQ=255)
                                  aaaGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAaatcaatc                                                                                                        <  1:19804/141‑1 (MQ=255)
                                    aGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATccc                                                                                                      <  1:71683/141‑1 (MQ=255)
                                    aGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAAACAATccc                                                                                                      >  1:456047/1‑141 (MQ=255)
                                     ggCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCg                                                                                                     >  2:283998/1‑141 (MQ=255)
                                      gCTAATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCgg                                                                                                    <  1:49358/141‑1 (MQ=255)
                                                 ggATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑CTATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGt                                                                                         >  1:413627/1‑141 (MQ=255)
                                                       aaaGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGaa                                                                                   <  1:99158/141‑1 (MQ=255)
                                                        aaGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGaaa                                                                                  >  2:242290/1‑141 (MQ=255)
                                                        aaGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGaaa                                                                                  >  2:401447/1‑141 (MQ=255)
                                                        aaGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGaaa                                                                                  <  2:442155/141‑1 (MQ=255)
                                                          gATATTGAATTTACGTTTGTAGAGAAAAAAGAAAAAA‑‑ATATATACTTTAGTGATAGCAAAAAATAAAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATg                                                                                <  2:222464/141‑1 (MQ=38)
                                                          aatatTAAATTTACGTGTGTATAGAAAAAAGAAGAAA‑‑ATATATAATTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATg                                                                                <  2:374931/140‑1 (MQ=255)
                                                           atatTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGa                                                                               >  1:61234/1‑141 (MQ=255)
                                                            aatTAAATTTACGTATGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGATTAGAATATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGAt                                                                              <  2:388330/140‑1 (MQ=38)
                                                              ttGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATaa                                                                            >  2:374167/1‑141 (MQ=255)
                                                              ttGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATaa                                                                            >  1:174558/1‑141 (MQ=255)
                                                               tGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAACGATaaa                                                                           <  1:286505/141‑1 (MQ=255)
                                                                gAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATaaaa                                                                          >  2:501620/1‑141 (MQ=255)
                                                                gAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATaaaa                                                                          >  2:317325/1‑141 (MQ=255)
                                                                gAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATaaaa                                                                          >  2:204815/1‑141 (MQ=255)
                                                                  aTTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACg                                                                        <  1:272473/141‑1 (MQ=255)
                                                                   tttACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACgt                                                                       >  2:238389/1‑141 (MQ=255)
                                                                      tcGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGta                                                                    <  2:36507/140‑1 (MQ=255)
                                                                          ttGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGtaaata                                                                >  2:306581/1‑141 (MQ=255)
                                                                            gTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGtaaataaa                                                              >  1:162395/1‑141 (MQ=255)
                                                                              agagAAAAAAGAAAAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAAtt                                                            <  2:231415/141‑1 (MQ=255)
                                                                                      aagaagAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTg                                                    >  1:505858/1‑141 (MQ=255)
                                                                                       agaagaAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTgg                                                   >  2:289344/1‑141 (MQ=255)
                                                                                       agaagaAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTgg                                                   >  1:256490/1‑141 (MQ=255)
                                                                                          agaaA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTAt                                                >  2:88481/1‑141 (MQ=255)
                                                                                          agaaA‑‑ATATATACTTTAGTGATAGCTTAGATAATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTAt                                                <  2:226549/141‑1 (MQ=255)
                                                                                             aa‑‑aTATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAg                                             >  2:417405/1‑141 (MQ=255)
                                                                                             aa‑‑aTATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATccc                                                                                                      >  2:201633/1‑84 (MQ=255)
                                                                                             aa‑‑aTATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATccc                                                                                                      <  1:201633/84‑1 (MQ=255)
                                                                                              a‑‑aTATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGt                                            >  2:141131/1‑141 (MQ=255)
                                                                                                 atatatACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGtc                                           <  1:137369/141‑1 (MQ=255)
                                                                                                  tatataCTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGtct                                          >  2:275955/1‑141 (MQ=255)
                                                                                                   atataCTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGtctt                                         >  1:105932/1‑141 (MQ=255)
                                                                                                   atataCTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGtctt                                         <  1:154072/141‑1 (MQ=255)
                                                                                                   atataCTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGtctt                                         >  1:462128/1‑141 (MQ=255)
                                                                                                      taCTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGGGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTg                                      >  1:478373/1‑141 (MQ=255)
                                                                                                       aCTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTGCTGt                                     >  1:31846/1‑141 (MQ=255)
                                                                                                        cTTTAGTGATAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGtt                                    >  1:66992/1‑141 (MQ=255)
                                                                                                        cTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGtt                                    <  2:300906/141‑1 (MQ=255)
                                                                                                        cTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGtt                                    <  1:225178/141‑1 (MQ=255)
                                                                                                          ttAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGtttt                                  <  2:67471/141‑1 (MQ=255)
                                                                                                                aTAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCa                            >  1:149977/1‑141 (MQ=255)
                                                                                                                aTAGCTTAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCa                            >  1:491936/1‑141 (MQ=255)
                                                                                                                      tAGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTa                      >  1:346551/1‑141 (MQ=255)
                                                                                                                       aGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTAt                     <  1:61810/141‑1 (MQ=255)
                                                                                                                       aGATTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTAt                     <  1:294223/141‑1 (MQ=255)
                                                                                                                         aTTATAAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCa                   <  1:273985/141‑1 (MQ=255)
                                                                                                                         aTTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCa                   >  1:461288/1‑141 (MQ=255)
                                                                                                                         aTTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCa                   <  1:84477/141‑1 (MQ=255)
                                                                                                                            ataAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCActg                >  1:37858/1‑141 (MQ=255)
                                                                                                                             taAAAAAAGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCActgc               <  2:310754/141‑1 (MQ=255)
                                                                                                                              aaaaaaaGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCActgct              >  1:193072/1‑141 (MQ=255)
                                                                                                                                  aaaGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCACTGCTGGtt          <  2:435389/141‑1 (MQ=255)
                                                                                                                                  aaaGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCACTGCTGGtt          >  1:194716/1‑141 (MQ=255)
                                                                                                                                    aGCGGATATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCACTGCTGGTtgt        >  2:284734/1‑141 (MQ=255)
                                                                                                                                          gaTGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCACTGCTGGTTGTGGCATg  <  2:3091/141‑1 (MQ=255)
                                                                                                                                          |                                                                                                                                            
TCCAAAGTTATTGTTAAAAGGTTCAGGGAATTTAAAAGGCTCATCAGTTGGATATAAAGATATTGAATTTACGTTTGTAGAGAAAAAAGAAGAAA‑‑ATATATACTTTAGTGATAGCTTAGATTATAAAAAAAGCGGAGATGTATAATCATGGCTCAATCAGAATATGAAATCAATCCCGGAAAAAGAGAGTGATGAAATGATAAAACGTGTAAATAAATTAGTGCTTGGTATTAGTCTTCTGTTTTTAGTCATTAGTATCACTGCTGGTTGTGGCATG  >  CP000730/110768‑111044

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A