Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F104 I0 R1
|
363 |
191.1 |
6964768 |
98.3% |
6846366 |
140.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,987,858 |
G→C |
5.7% |
intergenic (‑100/+15) |
yecJ ← / ← azuC |
DUF2766 family protein/acid‑inducible small membrane‑associated protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,987,858 | 0 | G | C | 5.7%
| 739.7
/ 28.1
| 210 | intergenic (‑100/+15) | yecJ/azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| Reads supporting (aligned to +/- strand): ref base G (104/94); new base C (3/9); total (107/103) |
| Fisher's exact test for biased strand distribution p-value = 7.84e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.78e-01 |
Only 100 of 214 total aligned reads displayed.
CAACCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCTTTG > NC_000913/1987710‑1988002
|
caaCCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑Cg < 4:1337891/149‑1 (MQ=255)
aaCCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑Cgg > 4:1167575/1‑149 (MQ=255)
aTCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAgg < 1:1671724/149‑1 (MQ=255)
aGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑TCCGGCAGG‑ttt < 1:1055454/149‑1 (MQ=255)
aGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑ttt > 4:1053161/1‑149 (MQ=255)
gAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑TCCGGCAGG‑tttt < 3:419995/149‑1 (MQ=255)
aaaCTAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑ttttt > 2:360463/1‑149 (MQ=255)
aaaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑TCCGGCAGG‑ttttt < 2:1542004/149‑1 (MQ=255)
aaaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑ttttt < 4:1292482/149‑1 (MQ=255)
aaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tttttt < 4:1559122/149‑1 (MQ=255)
aaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACAC‑AAAAAACCTGCTCCG‑GCAGG‑ttttttt < 4:1610349/149‑2 (MQ=255)
aaCCAATTCCTGATCCGCATTCCGCAGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCCTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tttttt < 2:1141893/149‑1 (MQ=255)
aCCAATTCGTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTg > 3:1212885/1‑149 (MQ=255)
ccAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGt > 1:1580098/1‑149 (MQ=255)
ccAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGt > 2:883404/1‑149 (MQ=255)
ccAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGt > 1:1199285/1‑149 (MQ=255)
aaTTCCTGATCAGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGACGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTa > 1:1432108/1‑149 (MQ=255)
ttCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATc < 1:691185/149‑1 (MQ=255)
ttCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATc > 1:820232/1‑149 (MQ=255)
ttCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATc < 4:1219990/149‑1 (MQ=255)
cTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑ttt < 3:1165127/137‑1 (MQ=255)
tGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCGGG‑TTTTTTGTTATCGGaa < 2:1027767/149‑1 (MQ=255)
tGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGaa < 2:985654/149‑1 (MQ=255)
cGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACata < 4:167048/149‑1 (MQ=255)
ttCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGcc > 1:648024/1‑149 (MQ=255)
tCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCt < 3:1479873/149‑1 (MQ=255)
tGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTAc < 3:1499475/149‑1 (MQ=255)
tGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTAc < 2:1648758/149‑1 (MQ=255)
tGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTAc < 4:836156/149‑1 (MQ=255)
tGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTAc < 2:1391693/149‑1 (MQ=255)
tGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTAc < 2:147872/149‑1 (MQ=255)
gggACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACg > 2:408716/1‑149 (MQ=255)
gggACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACg > 1:1743235/1‑149 (MQ=255)
ggACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGt > 4:907242/1‑149 (MQ=255)
ggACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTAACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAATACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTActt < 2:1199285/149‑3 (MQ=255)
aTCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCttt < 4:1409277/149‑1 (MQ=255)
aTCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCttg > 1:1551551/1‑148 (MQ=255)
tCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTACAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTg < 2:425333/149‑1 (MQ=255)
cGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGa < 4:1683003/149‑1 (MQ=255)
gTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑TCCGGCAGG‑tttttt > 4:346904/1‑112 (MQ=255)
gTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tttttt < 1:1345719/112‑1 (MQ=255)
gTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATc > 2:1062105/1‑118 (MQ=255)
tAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAAc < 3:1123838/149‑1 (MQ=255)
tCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCtt > 1:1169515/1‑149 (MQ=255)
tCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCtt > 3:923106/1‑149 (MQ=255)
aTAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAAt > 1:1112768/1‑149 (MQ=255)
gCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGt < 1:940335/149‑1 (MQ=255)
ttttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTAt > 2:123922/1‑149 (MQ=255)
aaGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACa > 2:1455795/1‑149 (MQ=255)
aGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACAt > 2:330956/1‑149 (MQ=255)
ccGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATAc > 4:681114/1‑149 (MQ=255)
cGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACt > 1:26082/1‑149 (MQ=255)
gTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACtt > 1:1012554/1‑149 (MQ=255)
tagtagCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCa < 3:1053161/149‑1 (MQ=255)
gtagCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAgg > 3:960682/1‑149 (MQ=255)
agCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTAtt < 1:596186/131‑1 (MQ=255)
gCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGAtt > 3:94455/1‑149 (MQ=255)
gCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGAtt > 2:1314080/1‑149 (MQ=255)
gACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGAtttt > 2:595865/1‑149 (MQ=255)
gACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGATATTGAACATACTTTTCAGGAtttt < 4:144374/149‑1 (MQ=255)
acaTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTg < 2:67904/111‑1 (MQ=255)
caTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGt > 4:142981/1‑149 (MQ=255)
aTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGtt < 4:825220/149‑1 (MQ=255)
aTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGtt > 4:558401/1‑149 (MQ=255)
aTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGtt > 3:6200/1‑149 (MQ=255)
cTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTc < 3:214490/104‑1 (MQ=255)
cTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTc > 4:214490/1‑104 (MQ=255)
cTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTc < 1:1517529/149‑1 (MQ=255)
cAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATc > 3:1443249/1‑149 (MQ=255)
aTAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGc > 1:67734/1‑149 (MQ=255)
acaTCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCg > 3:1262360/1‑149 (MQ=255)
aTCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGAc > 4:405732/1‑149 (MQ=255)
tCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGAcc > 2:600283/1‑149 (MQ=255)
aCCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCAtt < 3:1379293/149‑1 (MQ=255)
ccGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCAttt < 3:681114/149‑1 (MQ=255)
cGTCATCAAGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTg < 2:1432108/149‑1 (MQ=255)
gTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGt < 3:1339592/149‑1 (MQ=255)
tcatcaGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGtt < 3:907242/149‑1 (MQ=255)
tcatcaGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATACTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGtt < 4:1057134/149‑1 (MQ=255)
tcaGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTtata > 3:815358/1‑149 (MQ=255)
gACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAgg > 1:1325226/1‑149 (MQ=255)
acacAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTTAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgt < 2:820232/149‑1 (MQ=255)
acacAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgt < 3:1359914/149‑1 (MQ=255)
aacaaaaaaCCTGC‑TCCGGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGAAGCACTCCGACCATTTGTTATACAGgtgt > 3:487436/4‑149 (MQ=255)
caAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGtt < 2:1112768/149‑1 (MQ=255)
aaaaaaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTa > 4:946815/1‑149 (MQ=255)
aaaaaaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTa < 1:960254/149‑1 (MQ=255)
aaaaaaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTa > 3:269219/1‑149 (MQ=255)
aaaaaaCCTGCTCCG‑GCAGGTTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTa > 3:1553599/1‑149 (MQ=255)
aaaaaaCCTGC‑TCCGGCAGGTTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGtt < 3:76910/137‑1 (MQ=255)
aaaaaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTAt < 3:558401/149‑1 (MQ=255)
aaaaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTg > 2:490957/1‑81 (MQ=255)
aaaaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTg < 1:490957/81‑1 (MQ=255)
aaaaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTAtt < 2:648024/149‑1 (MQ=255)
aaaaaCCTGC‑CGGAGCAGC‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTTATCGCGGCACTCCGACCATTTGt > 4:134853/1‑134 (MQ=255)
aaaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTg > 1:1134470/1‑149 (MQ=255)
cTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCttt < 3:144984/149‑1 (MQ=255)
cTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTAATTGTCttt < 4:1485877/149‑1 (MQ=255)
tGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATATTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCTTTg > 2:289606/1‑149 (MQ=255)
tGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCTTTg < 1:422369/149‑1 (MQ=255)
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CAACCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCTTTG > NC_000913/1987710‑1988002
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
