Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A19 F34 I0 R1
|
470 |
116.5 |
4231616 |
98.1% |
4151215 |
142.3 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,987,858 |
G→C |
6.8% |
intergenic (‑100/+15) |
yecJ ← / ← azuC |
DUF2766 family protein/acid‑inducible small membrane‑associated protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,987,858 | 0 | G | C | 6.8%
| 423.0
/ 12.4
| 125 | intergenic (‑100/+15) | yecJ/azuC | DUF2766 family protein/acid‑inducible small membrane‑associated protein |
| Reads supporting (aligned to +/- strand): ref base G (65/51); new base C (3/6); total (68/57) |
| Fisher's exact test for biased strand distribution p-value = 2.98e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.84e-01 |
Only 100 of 125 total aligned reads displayed.
CCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCTTTGCGC > NC_000913/1987713‑1988005
|
cacaTCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGc > 1:314478/1‑149 (MQ=255)
acaTCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCa < 4:414796/149‑1 (MQ=255)
caTCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCATCATCAGGACACAAAAAAACCTGC‑CGGAGCAg < 2:634236/149‑1 (MQ=255)
aTCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCAGCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAgg > 4:684812/1‑149 (MQ=255)
aTCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAgg > 4:338827/1‑149 (MQ=255)
tCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑t > 4:262108/1‑149 (MQ=255)
cAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tt > 2:266117/1‑149 (MQ=255)
gAAACCAATTCCTGATCGGCATTCAGCGTCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCTACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tttt > 2:149857/1‑149 (MQ=255)
gAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tttt > 2:941049/1‑149 (MQ=255)
aaCCAATTCCTGGTCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATTGCATTTTGAAAGCCGGTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tttttt < 1:97316/149‑1 (MQ=255)
aaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tttttt < 3:444321/149‑1 (MQ=255)
aaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tttttt < 4:19520/149‑1 (MQ=255)
aaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tttttt < 2:846415/149‑1 (MQ=255)
aaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tttttt < 3:62241/149‑1 (MQ=255)
aaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑tttttt < 3:386689/149‑1 (MQ=255)
aaCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGAATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑TCCGGCAGG‑tttttt < 4:196511/149‑1 (MQ=255)
aCCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑TCCGGCAGG‑ttttttt < 1:253174/149‑2 (MQ=255)
ccAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGt > 4:531129/1‑149 (MQ=255)
ccAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACAC‑AAAAAACCTGCTCCG‑GCAGG‑tttttttgt < 2:106415/149‑4 (MQ=255)
cAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTCATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑TCCGGCAGG‑tttttttgt < 3:896988/149‑4 (MQ=255)
aaTTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAGCTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTa < 3:684812/149‑1 (MQ=255)
aaTTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTa > 1:493188/1‑149 (MQ=255)
aaTTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTa > 4:145378/1‑149 (MQ=255)
aTTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTAt > 3:158938/1‑149 (MQ=255)
gATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAAc > 1:85913/1‑149 (MQ=255)
tCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACat < 2:85913/149‑1 (MQ=255)
gCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATAtt > 1:218981/1‑149 (MQ=255)
ggCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCTTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCgg > 1:825529/1‑149 (MQ=255)
ggCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCgg < 4:878564/149‑1 (MQ=255)
cATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCtt > 1:35422/1‑149 (MQ=255)
tCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTg > 2:1002466/1‑149 (MQ=255)
gTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGaa > 3:749907/1‑149 (MQ=255)
tCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCtt > 2:1031130/1‑149 (MQ=255)
tCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCtt < 4:750994/149‑1 (MQ=255)
aTAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAAt > 2:816721/1‑149 (MQ=255)
aTAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAAt > 3:399402/1‑149 (MQ=255)
tAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATa < 2:120738/149‑1 (MQ=255)
tAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATa > 1:120738/1‑149 (MQ=255)
gCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGt > 4:631865/1‑149 (MQ=255)
cATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGaa < 3:1017106/134‑1 (MQ=255)
cATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGaa > 4:1017106/1‑134 (MQ=255)
cATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGtt < 1:941049/149‑1 (MQ=255)
aTTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTa < 4:749907/149‑1 (MQ=255)
aTTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTa > 2:6695/1‑149 (MQ=255)
ttttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTAt < 4:158938/149‑1 (MQ=255)
ttttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTAt > 2:141399/1‑149 (MQ=255)
ttttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTAt > 2:184648/1‑149 (MQ=255)
tttGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTAtt < 3:682096/149‑1 (MQ=255)
tGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGa > 4:190785/1‑149 (MQ=255)
gAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGaa < 3:531129/149‑1 (MQ=255)
gAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGaa < 2:352444/149‑1 (MQ=255)
aaGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACa > 2:317734/1‑149 (MQ=255)
gCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCtt > 2:926560/1‑120 (MQ=255)
gCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCtt < 1:926560/120‑1 (MQ=255)
gTTATAGTAGCGACTTCACATCTTCAGCGATAGTGACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACtt < 1:873511/149‑1 (MQ=255)
gTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCTCCG‑GCAGG‑tttttt < 4:427315/84‑1 (MQ=37)
gTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGCTCCG‑GCAGG‑tttttt > 3:427315/1‑84 (MQ=37)
ttATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACttt > 1:786614/1‑149 (MQ=255)
ttATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACttt < 2:527029/149‑1 (MQ=255)
tagtagCGACTTCACATCTTCCGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCa < 2:810614/149‑1 (MQ=255)
tagtagCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCa < 1:184648/149‑1 (MQ=255)
tagtagCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCa > 2:189646/1‑149 (MQ=255)
gtagCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAgg < 1:927671/149‑1 (MQ=255)
tagCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGa > 2:862403/1‑149 (MQ=255)
gCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGAtt > 1:11349/1‑149 (MQ=255)
gCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGAtt < 2:62024/149‑1 (MQ=255)
cGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGAttt < 4:127583/149‑1 (MQ=255)
aCTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTg > 1:247547/1‑149 (MQ=255)
ttCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGA‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTgcg > 4:719362/1‑149 (MQ=255)
caTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGt < 2:517094/149‑1 (MQ=255)
aTCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTa > 2:909169/1‑118 (MQ=255)
tCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGttt > 4:157077/1‑149 (MQ=255)
gCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATcgc > 1:147976/1‑149 (MQ=255)
gCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATcgc < 4:399402/149‑1 (MQ=255)
gTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACt > 2:160166/1‑149 (MQ=255)
tCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACata < 3:534223/65‑1 (MQ=255)
tCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACata > 4:534223/1‑65 (MQ=255)
acaTCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCg > 2:5471/1‑149 (MQ=255)
acaTCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCg > 3:165938/1‑149 (MQ=255)
aTCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGAc < 3:631865/149‑1 (MQ=255)
tCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGAcc > 3:166940/1‑149 (MQ=255)
tCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGAcc > 4:693101/1‑149 (MQ=255)
aCCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCAtt < 3:1032712/149‑1 (MQ=255)
cGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTg < 1:317734/149‑1 (MQ=255)
caGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATAc > 4:105028/1‑149 (MQ=255)
ggACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAg < 1:5471/149‑1 (MQ=255)
acacAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGTGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgt < 2:314478/149‑1 (MQ=255)
acacAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgt < 4:854709/149‑1 (MQ=255)
acacAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgt < 4:1028051/149‑1 (MQ=255)
acacAAAAAAACCTGC‑CGGAGCAGG‑TTTTGTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgt < 2:218981/149‑1 (MQ=255)
cacaAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGTGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgtg > 1:1060783/1‑149 (MQ=255)
acaAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgtgt > 3:699043/1‑149 (MQ=255)
acaAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgtgt > 4:630013/1‑149 (MQ=255)
acaAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGgtgt > 4:709327/1‑149 (MQ=255)
aaaaaaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTCGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTa > 1:308235/1‑149 (MQ=255)
aaaaaaCCTGC‑TCCGGCAGGTTTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTa > 1:489502/1‑149 (MQ=255)
aaaaaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTAt > 2:214619/1‑149 (MQ=255)
aaaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTg > 2:137222/1‑149 (MQ=255)
aaaCCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGt > 1:583375/1‑149 (MQ=255)
tGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCTTTg > 2:960193/1‑149 (MQ=255)
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CCACATCAGAAACCAATTCCTGATCGGCATTCAGCGGCTGGGACATCGTAAACTCCTGATAGCATTTTGAAAGCCGTTATAGTAGCGACTTCACATCTTCAGCGATAGTCACATCCACCGTCATCAGGACACAAAAAAACCTGC‑CGGAGCAGG‑TTTTTTGTTATCGGAACATATTGCCTGGCGGTACGTCTTTGAACGTCTTGCAATAGTTATTGAACATACTTTTCAGGATTTTGCGCAGTTTCATCGCGGCACTCCGACCATTTGTTATACAGGTGTTATTGTCTTTGCGC > NC_000913/1987713‑1988005
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
