Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A89 F1 I1 R1
|
15 |
55.0 |
3646496 |
95.5% |
3482403 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,489,216 |
C→T |
intergenic (‑10/+7) |
glpR ← / ← glpG |
DNA‑binding transcriptional repressor/predicted intramembrane serine protease |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,489,216 | 0 | C | T | 100.0%
| 118.6
/ NA
| 32 | intergenic (‑10/+7) | glpR/glpG | DNA‑binding transcriptional repressor/predicted intramembrane serine protease |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (21/11); total (21/11) |
ACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGC > REL606/3489144‑3489288
|
aCTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTg < 2:1452130/76‑1 (MQ=255)
gACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGaa > 1:1445611/1‑76 (MQ=255)
cATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAatt > 1:1108608/1‑76 (MQ=255)
aTAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAatta < 1:1034288/76‑1 (MQ=255)
tAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAattat > 2:68541/1‑76 (MQ=255)
gctgTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTAttttcgtt > 2:1230364/1‑76 (MQ=255)
ctgTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTAttttcgttt > 2:595678/1‑76 (MQ=255)
gTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTAttttcgttttc > 2:1366747/1‑76 (MQ=255)
gTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTAttttcgttttc > 2:843695/1‑76 (MQ=255)
gTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTAttttcgttttc > 1:744827/1‑76 (MQ=255)
aGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGCTTTCGCGCATTg < 1:605969/76‑1 (MQ=255)
ttCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAg < 2:1547981/76‑1 (MQ=255)
ttCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAg < 2:1412191/76‑1 (MQ=255)
cGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCg < 2:317934/76‑1 (MQ=255)
gATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGa > 1:1648625/1‑76 (MQ=255)
taataCCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt > 1:1811622/1‑76 (MQ=255)
taataCCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAAt < 2:477284/76‑1 (MQ=255)
gTTGTGACGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACaaa < 2:1487627/76‑1 (MQ=255)
cGTTGTGTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATc > 2:1786652/1‑76 (MQ=255)
ttGTGTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGc > 2:1472876/1‑76 (MQ=255)
tgtgTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCt > 1:1312109/1‑76 (MQ=255)
tgtgTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCt < 2:152321/76‑1 (MQ=255)
tgtgTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCt < 2:1343905/76‑1 (MQ=255)
tgtgTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCt > 1:62982/1‑76 (MQ=255)
tgtgTTTGTTTCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCt > 1:545239/1‑76 (MQ=255)
ttgtttCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAcc > 2:1612365/1‑76 (MQ=255)
tgtttCATTTCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAAccc < 2:1270224/76‑1 (MQ=255)
tttCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTa > 1:455848/1‑76 (MQ=255)
ttCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTaa > 1:1568995/1‑76 (MQ=255)
tCTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAc > 1:484586/1‑76 (MQ=255)
cTAAATCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAAcc > 1:1283033/1‑76 (MQ=255)
aaaTCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCg > 1:1374949/1‑76 (MQ=255)
aTCTCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGc > 1:878146/1‑76 (MQ=255)
|
ACTGACATAACCCTGCTGTTTAACCAGTTCGATAATACCGTTGTGACGTTGTGTTTGTTTCATTTCTAAATCCCTGGAATTATTTTCGTTTTCGCGCATTGAGCGAATCAACAAAAGCCATCGCTAAACCCACGGCTAACCCGGC > REL606/3489144‑3489288
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
