Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A52 F1 I1 R1
|
19 |
66.0 |
4263516 |
97.2% |
4144137 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
1,476,358 |
Δ13 bp |
coding (77‑89/537 nt) |
ydcN → |
predicted DNA‑binding transcriptional regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 1476357 | 2 (0.030) | 48 (0.760) |
38/140 |
0.6 |
96.1% |
coding (76/537 nt) |
ydcN |
predicted DNA‑binding transcriptional regulator |
| ? | REL606 |
1476371 = |
2 (0.030) | coding (90/537 nt) |
ydcN |
predicted DNA‑binding transcriptional regulator |
GGAAAATCTCGCTCGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1476284‑1476357
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGGAAAAT > REL606/1476371‑1476445
GGAAAATCTCGCTCGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGG > 1:1536097/1‑76
GGAAAATCTCGCTCGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGAGACGG > 2:359709/1‑76
GGAAAATCTCGCTCGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGGCTTTCGCGACGG > 2:474434/1‑76
AAAATCTCGCTCGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGC > 1:966492/1‑76
CGCTCGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTA > 1:1663615/1‑76
GCTCGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAA > 1:1154413/1‑76
TCGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAG < 1:542931/76‑1
CGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGC > 2:727852/1‑76
CGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGC < 1:580892/76‑1
CGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGGTTCTAAAGC > 2:1204287/1‑76
TTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAAT < 2:2075743/76‑1
TTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAAT > 1:1434125/1‑76
TTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATG > 2:484261/1‑76
TTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTT < 2:559515/76‑1
TTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTT < 2:1757054/76‑1
ATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAG < 1:326951/76‑1
ATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAG > 2:2064184/1‑76
TCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGG < 2:2023886/76‑1
CCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAG > 2:1252100/1‑76
CACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATT > 1:555666/1‑76
CACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATT < 2:609323/76‑1
ACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTG < 1:2070850/76‑1
ACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTG < 2:1239632/76‑1
ACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTG < 2:442960/76‑1
ACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTG > 1:1271636/1‑76
TAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCCTTTCCAAAGCAATGATAGGGCAGATTGAGC > 2:598143/1‑76
AACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGT > 2:625307/1‑76
ACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTA > 2:1095931/1‑76
ACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTA > 1:1663309/1‑76
CTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGA > 1:124588/1‑76
CTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGA > 2:188651/1‑76
TACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAG < 2:543692/76‑1
TACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAG > 2:193378/1‑76
ACGCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGT > 2:1511181/1‑76
GCCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCC < 1:1510316/76‑1
CCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCA < 2:2067383/76‑1
CCAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCA > 2:211934/1‑76
CAGCAGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAG > 2:611025/1‑76
AGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCG < 1:1666415/76‑1
AGCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCG < 2:1051333/76‑1
GCGCGGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGA < 1:1009893/76‑1
GGCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGT > 1:69738/1‑76
GCTGGAGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTC < 2:1988631/76‑1
AGTCTTTCGCGGCGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGAC < 1:1212132/76‑1
AGTCTTTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGAC < 1:759019/76‑1
TTCGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTAT < 1:963254/76‑1
CGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGG > 2:884318/1‑76
CGCGACGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGG < 1:1764142/76‑1
CGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGGAAAAT > 2:548144/1‑76
CGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGGAAAAT > 2:1691865/1‑76
CGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGGAAAAT < 1:483979/76‑1
CGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGGAAAAT < 1:461578/76‑1
CGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGGAAAAT < 1:408660/76‑1
GGAAAATCTCGCTCGCTTTTTATCCACCACACTTAAACAACTACGCCAGCAGCGCGGCTGGAGTCTTTCGCGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1476284‑1476357
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gcgacGGGCGTTTCTAAAGCAATGTTAGGGCAGATTGAGCGTAATGAGTCCAGTCCGACGGTCGCGACATTATGGAAAAT > REL606/1476371‑1476445
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
