Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A52 F1 I1 R1
|
19 |
66.0 |
4263516 |
97.2% |
4144137 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,298,585 |
+ACG |
coding (498/1359 nt) |
glpT ← |
sn‑glycerol‑3‑phosphate transporter |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2298580 | 0 (0.000) | 45 (0.700)
+CGA |
39/134 |
0.4 |
100% |
coding (503/1359 nt) |
glpT |
sn‑glycerol‑3‑phosphate transporter |
| ? | REL606 |
2298581 = |
0 (0.000) | coding (502/1359 nt) |
glpT |
sn‑glycerol‑3‑phosphate transporter |
GCATATAGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2298506‑2298580
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTAC > REL606/2298581‑2298655
|||
GCATATAGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACC > 2:1756353/1‑76
CATATAGAGCGCCGCATGCCAGTCATTGAATCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCG > 1:328074/1‑76
ATATAGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGA < 2:1313168/76‑1
ATAGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACG < 2:935959/76‑1
AGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGAC < 1:1290886/76‑1
GCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGT > 2:1421990/1‑76
GCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGT < 2:1454269/76‑1
CCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTG > 2:1260096/1‑76
CCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTG < 1:1976504/76‑1
GCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCG < 2:1478397/76‑1
CATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGC > 2:2015513/1‑76
ATGCCAGTCATTGACCCAGGCCACCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCA < 2:454926/76‑1
GCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACA > 1:1504672/1‑76
CAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGT < 1:1107272/76‑1
TCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCC < 2:1428936/76‑1
CATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCA > 1:690429/1‑76
CATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCA > 2:2025711/1‑76
ATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCAC < 1:1398741/76‑1
AACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTG > 2:673212/1‑76
CCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGAC < 2:750962/76‑1
AGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACAC > 2:2038254/1‑76
CCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAAT < 1:1666383/76‑1
ATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGC > 1:751250/1‑76
AGCAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCAC > 2:289868/1‑76
CAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGc > 1:166151/1‑75
CAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGT < 2:734566/76‑1
CAGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGT > 1:1125169/1‑76
AGGAACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTT > 1:1215201/1‑76
GAACAGCAGCGGCGGAATACCACCACCGACGACGTTGCGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCT < 2:951933/76‑1
AACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTT > 2:1521602/1‑76
ACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTT < 2:211957/76‑1
ACAGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTT < 2:430282/76‑1
AGCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCT < 2:622719/76‑1
GCAGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTG > 1:462816/1‑76
AGCGGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCG < 1:1322467/76‑1
GGCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACC > 1:1135904/1‑76
GCGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCA < 2:1573642/76‑1
CGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCAC < 1:211790/76‑1
CGGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCAC < 1:1850239/76‑1
GGAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACC > 1:832359/1‑76
GAATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCA > 2:889417/1‑76
AATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAG < 2:665776/76‑1
ATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGT > 1:1881733/1‑76
ATACCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGT < 1:175928/76‑1
CCACCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCA > 1:921653/1‑76
cCCACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACC < 1:589276/75‑1
ACCGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATA > 2:12512/1‑76
CGACGACGTTGTGCGCACAGTTCCACACTGCCACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGT < 1:445563/76‑1
CGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGT < 1:1773582/76‑1
CGACGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGT < 1:1243590/76‑1
ACGGCGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTAC < 1:2099288/76‑1
|||
GCATATAGAGCGCCGCATGCCAGTCATTGAACCAGGCCATCCCCAGCAGGAACAGCAGCGGCGGAATACCACCAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2298506‑2298580
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑CGACGTTGTGCGCACAGTTCCACACTGACACAATGCCGCCACGTTCTTTCTGCGACCACCAGTGCACCATAGTAC > REL606/2298581‑2298655
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
