Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A114 F1 I1 R1
|
20 |
239.5 |
15463816 |
93.1% |
14396812 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
1,372,511 |
G→A |
A18A (GCG→GCA) |
ycjP → |
predicted sugar transporter subunit: membrane component of ABC superfamily |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 1,372,511 | 0 | G | A | 99.5%
| 859.3
/ NA
| 210 | A18A (GCG→GCA) | ycjP | predicted sugar transporter subunit: membrane component of ABC superfamily |
| Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (114/95); minor base T (0/1); total (114/96) |
| Fisher's exact test for biased strand distribution p-value = 4.57e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 211 total aligned reads displayed.
CAGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAAGAGGC > REL606/1372438‑1372582
|
cAGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACt > 2:3577694/1‑76 (MQ=255)
cAGGAAACCGGTGAACCTCAATGGCAACAAATAAACGCACCCTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACt < 1:4616393/76‑1 (MQ=255)
aGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTg < 2:7691250/76‑1 (MQ=255)
aGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTg > 1:4518045/1‑76 (MQ=255)
gAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGtt < 1:2965087/76‑1 (MQ=255)
aaaCGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGttt < 2:81561/76‑1 (MQ=255)
aaCGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTtc < 2:4508095/76‑1 (MQ=255)
aCGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTtct > 1:7085901/1‑76 (MQ=255)
cGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTtctc < 2:1122049/76‑1 (MQ=255)
gggTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtca > 1:3187277/1‑76 (MQ=255)
gggTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtca > 1:3101276/1‑76 (MQ=255)
ggTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcat < 2:32139/76‑1 (MQ=255)
gTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcatc > 1:1249410/1‑76 (MQ=255)
gTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcatc < 2:3242133/76‑1 (MQ=255)
gAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcatcat < 1:5410894/76‑1 (MQ=255)
gAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcatcat > 2:5218810/1‑76 (MQ=255)
aaCCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCtcatcatc > 2:6095078/1‑76 (MQ=255)
ccTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCAc < 1:2748259/76‑1 (MQ=255)
cTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACg < 1:7039160/76‑1 (MQ=255)
cAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCt > 1:1129972/1‑76 (MQ=255)
aaTGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCCCTGTTTCTCATCATCACGCTg > 2:1320831/1‑76 (MQ=255)
aaTGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTg > 1:7571810/1‑76 (MQ=255)
tGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGtt < 1:6792635/76‑1 (MQ=255)
tGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGtt > 2:1132455/1‑76 (MQ=255)
caacaaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTcc > 2:1567377/1‑76 (MQ=255)
aacaaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCa < 2:536634/76‑1 (MQ=255)
acaaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAt > 2:6158418/1‑76 (MQ=255)
caaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCTGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtt < 2:2901308/76‑1 (MQ=255)
caaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtt > 2:6680427/1‑76 (MQ=255)
caaATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtt < 2:7488983/76‑1 (MQ=255)
aaaTAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAttt > 2:4313096/1‑76 (MQ=255)
aaTAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtttt > 2:4811634/1‑76 (MQ=255)
aaTAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtttt > 1:5435862/1‑76 (MQ=255)
aaTAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtttt > 1:3907945/1‑76 (MQ=255)
aTAAACGGACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAttttt > 2:347083/1‑76 (MQ=255)
tAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtttttt > 1:2650430/1‑76 (MQ=255)
tAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCAtttttt < 1:4677231/76‑1 (MQ=255)
aaaCGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTtg > 2:1491013/1‑76 (MQ=255)
aaaCGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTtg > 1:2829039/1‑76 (MQ=255)
aaCGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTtgt < 2:4844935/76‑1 (MQ=255)
aCGCAGACTCAGTCGCATCGCTGTTTACTTCGGGCTGGCACTGTGTCTCATGGTCACGCTGTTTCCATTTTTtgtg < 2:5634802/76‑1 (MQ=255)
cGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGa > 2:4936439/1‑76 (MQ=255)
cacaCTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATg > 2:6692902/1‑76 (MQ=255)
acTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTTATGCtg > 1:1445728/1‑76 (MQ=255)
acTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtg > 1:6962197/1‑76 (MQ=255)
acTCAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtg < 2:4061394/76‑1 (MQ=255)
cAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCTTTTTTTGTGATGCtgatg < 1:3512850/76‑1 (MQ=255)
cAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtgatg > 2:5940798/1‑76 (MQ=255)
cAGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtgatg < 1:6998162/76‑1 (MQ=255)
aGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtgatga < 1:5099516/76‑1 (MQ=255)
aGTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCtgatga > 2:475419/1‑76 (MQ=255)
gTCGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGAc < 2:1766799/76‑1 (MQ=255)
cGCATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCt > 2:2962516/1‑76 (MQ=255)
cATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCg < 2:2645228/76‑1 (MQ=255)
cATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCg > 2:5482348/1‑76 (MQ=255)
cATCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCg > 2:1630710/1‑76 (MQ=255)
aTCGGTTTTTACTGCGGGCTGGCACTGTTTGTCATCATCACGCTGTCTCCATTTGTTGTGATGCTGTTGACCTctg > 2:7422605/1‑74 (MQ=255)
aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt > 1:1595413/1‑76 (MQ=255)
aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt > 1:5486972/1‑76 (MQ=255)
aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt > 1:5870305/1‑76 (MQ=255)
aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt > 1:6504458/1‑76 (MQ=255)
aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt > 1:6709676/1‑76 (MQ=255)
aTCGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCACCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGt < 1:5645474/76‑1 (MQ=255)
cGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTc > 2:2383357/1‑76 (MQ=255)
cGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTc < 1:864446/76‑1 (MQ=255)
cGGTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTc < 1:3015254/76‑1 (MQ=255)
ggTTTTTACTGCGGGCTGTCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCa < 1:5569171/76‑1 (MQ=255)
ggTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCa > 1:6608039/1‑76 (MQ=255)
ggTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCa > 2:5552949/1‑76 (MQ=255)
ggTTTTTACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCa > 1:1500613/1‑76 (MQ=255)
tttttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAg > 1:4941718/1‑76 (MQ=255)
ttttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAgg < 1:205378/76‑1 (MQ=255)
ttttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAgg > 1:4163162/1‑76 (MQ=255)
tttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAggg > 2:6829416/1‑76 (MQ=255)
tttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAggg > 1:3599697/1‑76 (MQ=255)
tttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAggg < 2:1052160/76‑1 (MQ=255)
ttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGgc > 2:7130861/1‑76 (MQ=255)
ttACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGgc < 1:1912122/76‑1 (MQ=255)
tACTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGgcg < 2:3501217/76‑1 (MQ=255)
cTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGcgcg > 1:2279188/1‑76 (MQ=255)
cTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGcgcg < 1:4079193/76‑1 (MQ=255)
cTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGcgcg > 2:4199783/1‑76 (MQ=255)
cTGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGcgcg < 2:3827438/76‑1 (MQ=255)
tGCGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGa < 1:431768/76‑1 (MQ=255)
cGGGCTGGCTCTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGaaa < 1:3287469/76‑1 (MQ=255)
cGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGaaa > 2:2301994/1‑76 (MQ=255)
cGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGaaa > 2:7468874/1‑76 (MQ=255)
cGGGCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGaaa < 1:7683959/76‑1 (MQ=255)
gggCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAag > 2:2163841/1‑76 (MQ=255)
gggCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAag < 1:761389/76‑1 (MQ=255)
ggCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAaga < 1:5132386/76‑1 (MQ=255)
ggCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAaga < 2:118535/76‑1 (MQ=255)
ggCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAaga < 2:3130999/76‑1 (MQ=255)
gCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAagag > 2:3609364/1‑76 (MQ=255)
gCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAagag > 1:1272599/1‑76 (MQ=255)
gCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAagag < 1:7698655/76‑1 (MQ=255)
gCTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAagag > 2:6443229/1‑76 (MQ=255)
cTGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAAGAgg > 2:2975694/1‑76 (MQ=255)
tGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGACAGAGGc > 1:4577924/1‑76 (MQ=255)
tGGCACTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAAGAGGc > 1:4733252/1‑76 (MQ=255)
|
CAGGAAACGGGTGAACCTCAATGGCAACAAATAAACGCACACTCAGTCGCATCGGTTTTTACTGCGGGCTGGCGCTGTTTCTCATCATCACGCTGTTTCCATTTTTTGTGATGCTGATGACCTCGTTCAAGGGCGCGAAAGAGGC > REL606/1372438‑1372582
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
