Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A114 F1 I1 R1
|
20 |
239.5 |
15463816 |
93.1% |
14396812 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,878,496 |
C→T |
A46T (GCA→ACA) |
atpG ← |
F0F1 ATP synthase subunit gamma |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,878,496 | 0 | C | T | 99.0%
| 762.2
/ ‑2.7
| 200 | A46T (GCA→ACA) | atpG | F0F1 ATP synthase subunit gamma |
| Reads supporting (aligned to +/- strand): ref base C (1/1); new base T (110/88); total (111/89) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.64e-01 |
Only 100 of 216 total aligned reads displayed.
TCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTT > REL606/3878423‑3878568
|
tCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTAt < 1:1206900/76‑1 (MQ=255)
tCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTAt > 1:3105333/1‑76 (MQ=255)
cTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGtata < 2:3485327/76‑1 (MQ=255)
cTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGtata > 1:755013/1‑76 (MQ=255)
cTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGtata < 1:3160217/76‑1 (MQ=255)
ttCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATaa > 2:7343267/1‑76 (MQ=255)
ttCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATaa < 2:3170003/76‑1 (MQ=255)
tCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAg > 1:5114578/1‑76 (MQ=255)
tCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAg < 1:5746324/76‑1 (MQ=255)
tCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAg < 2:1769615/76‑1 (MQ=255)
tCCAGGGAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACAAATCACTTTCCGCATGGTTTCTGTATAAg > 2:4989795/1‑76 (MQ=255)
ccAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAgg < 2:7240547/76‑1 (MQ=255)
cAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGa > 1:5160837/1‑76 (MQ=255)
aGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGAc < 1:6092213/76‑1 (MQ=255)
aGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGAc < 1:6412460/76‑1 (MQ=255)
aGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGAc < 1:6693394/76‑1 (MQ=255)
aGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGAc < 2:4747160/76‑1 (MQ=255)
aGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGAc < 1:4834311/76‑1 (MQ=255)
gTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACgg > 2:1718573/1‑76 (MQ=255)
tAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGc > 1:863415/1‑76 (MQ=255)
aaGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCt > 2:4325592/1‑76 (MQ=255)
aaGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCt > 1:7110030/1‑76 (MQ=255)
aaGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCt > 1:4601569/1‑76 (MQ=255)
aGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTg < 1:4018471/76‑1 (MQ=255)
aGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTg > 2:2031529/1‑76 (MQ=255)
aGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTg > 2:2885369/1‑76 (MQ=255)
aGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTg < 2:4007841/76‑1 (MQ=255)
aGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTg > 2:5490483/1‑76 (MQ=255)
gTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGgcc > 2:478186/1‑76 (MQ=255)
cTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGgccgcc > 2:3291299/1‑76 (MQ=255)
cTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGgccgcc > 1:2023881/1‑76 (MQ=255)
cTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGgccgcc > 1:24683/1‑76 (MQ=255)
tataTTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCAt < 2:4825641/76‑1 (MQ=255)
atatTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATg < 1:7271923/76‑1 (MQ=255)
tatTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGc < 2:5795025/76‑1 (MQ=255)
tatTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGc > 2:6335867/1‑76 (MQ=255)
atTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCg > 1:4451090/1‑76 (MQ=255)
ttCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGa > 1:229710/1‑76 (MQ=255)
ttCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGa > 1:1964329/1‑76 (MQ=255)
tCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGAt > 1:1007746/1‑76 (MQ=255)
ccAGATTACCGTGTACAAGGTGACCAATCACTCTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATc > 1:365839/1‑76 (MQ=255)
cAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATcc < 1:7470736/76‑1 (MQ=255)
aGATTACCGTGTGCAAGGTGACCAATCACTTTGCTCATGGTTTCTGTATAAGGAGGGCTGGCCGCCATGCGATCCt < 2:6536965/76‑1 (MQ=255)
aGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCt < 2:7640759/76‑1 (MQ=255)
aGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCt > 1:6912795/1‑76 (MQ=255)
aGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCt < 1:5399088/76‑1 (MQ=255)
gATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTg < 2:7154697/76‑1 (MQ=255)
gATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTg < 1:6444877/76‑1 (MQ=255)
aTTCCCGTTTGCAAGGTGACCAATCACTTTGCGGATGTTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGc < 2:2279358/76‑1 (MQ=255)
aTTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGACGCCATGCGATCCTGc > 2:2789083/1‑76 (MQ=255)
ttACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCg < 2:212892/76‑1 (MQ=255)
tACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGa > 2:5918691/1‑76 (MQ=255)
tACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGa < 1:2231818/76‑1 (MQ=255)
tACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGa > 2:4392445/1‑76 (MQ=255)
aCCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGAt < 1:1526746/76‑1 (MQ=255)
aCCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGAt > 1:531861/1‑76 (MQ=255)
aCCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGAt > 2:3689945/1‑76 (MQ=255)
aCCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCCAt > 2:1138671/1‑76 (MQ=255)
ccGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGAGAtt > 1:3559308/1‑76 (MQ=255)
cGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGAttt < 1:7014182/76‑1 (MQ=255)
gtgtGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTa > 1:4417337/1‑76 (MQ=255)
gtgtGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTa > 2:662771/1‑76 (MQ=255)
gtgCAAGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACg > 1:3795070/1‑76 (MQ=255)
aaGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCACGCGATTTACGCAtt > 2:3598610/1‑76 (MQ=255)
aGGTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCAttt > 2:1307320/1‑76 (MQ=255)
gTGACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTg < 2:5282666/76‑1 (MQ=255)
gACCAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGa < 2:6973133/76‑1 (MQ=255)
cAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAgc < 2:2397588/76‑1 (MQ=255)
cAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAgc > 1:5559530/1‑76 (MQ=255)
cAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAgc > 1:912088/1‑76 (MQ=255)
cAATCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCAGCCCTGCGATCCTGCGATTTATGCATTTTGGCAgc > 1:2777362/1‑76 (MQ=255)
aaTCACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAgcg > 1:1697651/1‑76 (MQ=255)
cACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGTCATGCGATCCTGCGATTTACGCATTTTGGAAgcggcg < 1:3968256/76‑1 (MQ=255)
cACTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAgcggcg < 2:1073767/76‑1 (MQ=255)
aCTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGa > 1:4978834/1‑76 (MQ=255)
aCTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCCGCGa > 1:5847069/1‑76 (MQ=255)
cTTTGCGCATGTTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGAc < 2:3847185/76‑1 (MQ=255)
cTTTGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGAc > 2:1236382/1‑76 (MQ=255)
tttGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGAcc < 2:2649738/76‑1 (MQ=255)
ttGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCa > 2:7603684/1‑76 (MQ=255)
ttGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCa < 2:1558311/76‑1 (MQ=255)
ttGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCa > 1:7056146/1‑76 (MQ=255)
tGCGCATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCAt > 1:307900/1‑76 (MQ=255)
cgcATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCAtct < 2:5708443/76‑1 (MQ=255)
cgcATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCAtct < 2:6416922/76‑1 (MQ=255)
gcATGGTTTCTGAATAAGGACGGCTGCCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCAtctc < 2:6126531/76‑1 (MQ=255)
cATGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTcc > 2:4544857/1‑76 (MQ=255)
aTGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTccc > 2:2300210/1‑75 (MQ=255)
aTGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTTCa > 2:7475442/1‑76 (MQ=255)
aTGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCa < 1:1551401/76‑1 (MQ=255)
tgttttCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCAt < 1:254391/73‑1 (MQ=255)
tGGTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGGCCATCTCCAt > 2:1591920/1‑76 (MQ=255)
ggTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATc < 1:7655198/76‑1 (MQ=255)
gTTTCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCg < 1:1414915/76‑1 (MQ=255)
tttCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCACCTCCATCGc > 1:2153720/1‑76 (MQ=255)
ttCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCCTCGCt > 2:4358599/1‑76 (MQ=255)
tCTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCtt < 2:5625015/76‑1 (MQ=255)
cTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCttt < 2:6906915/76‑1 (MQ=255)
cTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCttt < 2:5945651/76‑1 (MQ=255)
cTGTATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCttt < 1:3411063/76‑1 (MQ=255)
|
TCTTCCAGGTAAGGGTGCTTATATTCCAGATTACCGTGTGCAAGGTGACCAATCACTTTGCGCATGGTTTCTGCATAAGGACGGCTGGCCGCCATGCGATCCTGCGATTTACGCATTTTGGAAGCGGCGACCATCTCCATCGCTTT > REL606/3878423‑3878568
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
