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Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A38 F1 I1 R1	17	54.1	3391312	97.1%	3292963	75.9

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
MC	REL606	1,609,175	Δ7,554 bp	between IS3	ybcW–[ECB_01526]	ybcW, gnsB, ynfN, ECB_01516, cspI, ydfP, ydfQ, ydfR, essQ, ECB_01522, ECB_01523, insE‑4, insF‑4, [ECB_01526]

Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	REL606	1607964–1609175	1616671–1615471	6297–8708	18 [16]	[15] 17	insE‑3–[insF‑4]	insE‑3,insF‑3,ybcW,gnsB,ynfN,ECB_01516,cspI,ydfP,ydfQ,ydfR,essQ,ECB_01522,ECB_01523,insE‑4,[insF‑4]

GATK/CNVnator alignment

N/A