mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 422,600 | (G)7→8 | intergenic (‑287/+175) | cyoA ← / ← ampG | cytochrome o ubiquinol oxidase subunit II/muropeptide transporter |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| MC | 1,609,175 | Δ7,554 bp | between IS3 | ybcW–[ECB_01526] | ybcW, gnsB, ynfN, ECB_01516, cspI, ydfP, ydfQ, ydfR, essQ, ECB_01522, ECB_01523, insE‑4, insF‑4, [ECB_01526] |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 1,886,204 | G→A | intergenic (‑34/+635) | yobF ← / ← yebO | hypothetical protein/hypothetical protein |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| RA | 3,252,012 | G→A | A250V (GCT→GTT) | nusA ← | transcription elongation factor NusA |
| RA | 3,419,837 | G→T | S122R (AGC→AGA) | ppiA ← | peptidyl‑prolyl cis‑trans isomerase A (rotamase A) |
| RA | 3,496,783 | C→T | G418D (GGT→GAT) | glgP ← | glycogen phosphorylase |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| RA | 4,165,828 | A→C | I290L (ATC→CTC) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| RA | 4,179,865 | A→C | intergenic (+159/‑28) | yjaG → / → hupA | hypothetical protein/HU, DNA‑binding transcriptional regulator, alpha subunit |
| MC JC | 4,349,332 | Δ5 bp | intergenic (‑199/‑73) | yjeH ← / → groES | predicted transporter/co‑chaperonin GroES |
| RA | 4,438,531 | T→G | D110A (GAC→GCC) | fbp ← | fructose‑1,6‑bisphosphatase |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 546991–547700 | 593453 | 45754–46463 | 18 [16] | [16] 17 | [insB‑6]–[fepA] | [insB‑6],insA‑6,nmpC,ybcR,ybcS,ybcT,ybcU,ECB_00510,nohB,ECB_00512,ECB_00513,ECB_00514,ECB_00515,ECB_00516,ECB_00517,appY,ompT,envY,ybcH,nfrA,nfrB,nfrB,ECB_00524,yhhI,ECB_00526,ECB_00527,ECB_00528,ECB_00529,ECB_00530,cusS,cusR,cusC,ylcC,cusB,cusA,pheP,ybdG,nfnB,ybdF,ybdJ,ybdK,insJ‑1,insK‑1,insB‑7,insA‑7,insK‑1,hokE,insL‑3,entD,[fepA] |
| * | * | ÷ | REL606 | 593540 | 619840–619116 | 25577–26301 | 17 [16] | [16] 18 | [fepA]–insA‑8 | [fepA],fes,ybdZ,entF,fepE,fepC,fepG,fepD,ybdA,fepB,entC,entE,entB,entA,ybdB,cstA,cstA,ybdD,ybdH,ybdL,ybdM,ybdN,insB‑8,insA‑8 |