Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A38 F1 I1 R1
|
17 |
54.1 |
3391312 |
97.1% |
3292963 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,419,837 |
G→T |
S122R (AGC→AGA) |
ppiA ← |
peptidyl‑prolyl cis‑trans isomerase A (rotamase A) |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,419,837 | 0 | G | T | 100.0%
| 174.6
/ NA
| 46 | S122R (AGC→AGA) | ppiA | peptidyl‑prolyl cis‑trans isomerase A (rotamase A) |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base T (24/22); total (24/22) |
GTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTGCGCAGGCCGTTATCGGCTTCATTT > REL606/3419765‑3419909
|
gTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTg > 2:1331927/1‑76 (MQ=255)
gTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTg > 1:883324/1‑76 (MQ=255)
gTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGCGGCTCTg > 1:352974/1‑76 (MQ=255)
ccGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCtt < 2:1394899/76‑1 (MQ=255)
ccGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCtt < 2:1225990/76‑1 (MQ=255)
ccGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCtt < 2:1141376/76‑1 (MQ=255)
cGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCttt > 1:583787/1‑76 (MQ=255)
aaaTCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGt > 2:1025930/1‑76 (MQ=255)
aTCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCa < 1:859953/76‑1 (MQ=255)
aTCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCa < 1:1665476/76‑1 (MQ=255)
tCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGGGGCTCTGTCTTTGTCAg > 1:1489036/1‑76 (MQ=255)
gCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGt < 2:1527646/76‑1 (MQ=255)
cTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTa < 1:994116/76‑1 (MQ=255)
cTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTa < 2:475120/76‑1 (MQ=255)
tGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTTTTTGTCAGCGGTAc > 1:813907/1‑76 (MQ=255)
gACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTAcg > 2:1062053/1‑76 (MQ=255)
gACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTAcg < 1:791600/76‑1 (MQ=255)
aCCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTAcgc > 1:907930/1‑76 (MQ=255)
aCCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTAcgc > 1:1078089/1‑76 (MQ=255)
ccATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTAcgcg > 2:614598/1‑76 (MQ=255)
cATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACgcgc > 1:1033531/1‑76 (MQ=255)
tGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCa > 1:361077/1‑76 (MQ=255)
cAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATcgc < 2:1190675/76‑1 (MQ=255)
aaggaaggCGTTATCGGCAACGTTGATAAAGAACTGGCTGGGGGCTCTGTCTTTGTCAGCGGTACGCGCCATcgcg > 2:1366824/1‑76 (MQ=255)
tgaaggCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGAGGTACGCGCCCTCGCGAt > 2:1514153/2‑76 (MQ=255)
ggaaggCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGAt > 2:215913/1‑76 (MQ=255)
aaggCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATgg > 1:79715/1‑76 (MQ=255)
aggCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGt < 1:1381927/76‑1 (MQ=255)
gTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCa > 1:1163009/1‑76 (MQ=255)
ttATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTTTCAGCGGTACGCGCCATCGCGATGGTGGCag > 2:1416207/1‑75 (MQ=255)
ttATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCAc > 1:1296521/1‑76 (MQ=255)
tATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCAcg < 1:553517/76‑1 (MQ=255)
tATCGGCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCAcg < 1:172612/76‑1 (MQ=255)
cGGCAACGTTGATAAAGAACGGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCgt < 1:1279697/76‑1 (MQ=255)
ggCAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCgtg < 2:1061211/76‑1 (MQ=255)
cAACGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGtt > 2:1471669/1‑76 (MQ=255)
aaCGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTg < 2:1323986/76‑1 (MQ=255)
aaCGTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTg < 2:172715/76‑1 (MQ=255)
gTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTgcgc < 2:751765/76‑1 (MQ=255)
gTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTgcgc < 2:1249985/76‑1 (MQ=255)
gTTGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTgcgc < 2:195501/76‑1 (MQ=255)
ttGATAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTgcgcg > 1:1035255/1‑75 (MQ=255)
tAAAGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTGCGCAGGcc > 1:306188/1‑76 (MQ=255)
aaaGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTGCGCAGGCCg > 1:1168043/1‑76 (MQ=255)
aaaGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTGCACAGGCCg > 2:402843/1‑76 (MQ=255)
aaGAACTGGCTGGTGGCTCTGTCTTTGTCAGCGGCACGCGCCATCGCGATGGAGCCACGCGTGTTGCgccggccgg > 2:1115016/1‑75 (MQ=255)
aGAACTGGCTGGTGGGCCTGTCTTTGTCAGGGGGATCGGCCAGCGCGGTGGGGGCACGCGAGATGCGCAGGGCggc > 2:1521602/1‑74 (MQ=255)
aaCTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTGCGCAGGCCGTTAt > 1:1316064/1‑76 (MQ=255)
aaCTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTGCGCAGGCCGTTAt > 2:657357/1‑76 (MQ=255)
aCTGGCTGGTGGCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGGCACGCGTGTTGCGCAGGCCGTTATc < 2:1020056/76‑1 (MQ=255)
ggtggCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTGCGCAGGCCGTTATCGGCTTCa < 1:128880/76‑1 (MQ=255)
ggCTCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTGCGCAGGCCGTTATCGGCTTCAttt > 1:894225/1‑76 (MQ=255)
|
GTAACCGAAATCACGCTGACCATGGTCAAGGAAGGCGTTATCGGCAACGTTGATAAAGAACTGGCTGGTGGCGCTGTCTTTGTCAGCGGTACGCGCCATCGCGATGGTGCCACGCGTGTTGCGCAGGCCGTTATCGGCTTCATTT > REL606/3419765‑3419909
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
