Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A108 F1 I1 R1
|
80 |
195.1 |
12639756 |
93.3% |
11792892 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
1,936,315 |
G→A |
G196G (GGC→GGT) |
torY ← |
TMAO reductase III (TorYZ), cytochrome c‑type subunit |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 1,936,315 | 0 | G | A | 99.5%
| 746.0
/ ‑5.7
| 187 | G196G (GGC→GGT) | torY | TMAO reductase III (TorYZ), cytochrome c‑type subunit |
| Reads supporting (aligned to +/- strand): ref base G (1/0); new base A (101/85); total (102/85) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 190 total aligned reads displayed.
CGGTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGC > REL606/1936242‑1936387
|
cgGTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCAcc > 2:4719678/1‑76 (MQ=255)
ggTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCa < 2:5491294/76‑1 (MQ=255)
gtgtGATCGGTACCAGGCTTCCCGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCAt < 2:1069689/76‑1 (MQ=255)
gTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCAt > 2:5855909/1‑76 (MQ=255)
gTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCAt < 2:5131671/76‑1 (MQ=255)
tGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCAtt > 2:193728/1‑76 (MQ=255)
gagaTCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTa < 1:5616918/76‑1 (MQ=255)
agaTCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAg < 2:4784491/76‑1 (MQ=255)
agaTCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAg < 2:4251522/76‑1 (MQ=255)
aTCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTc > 1:73407/1‑76 (MQ=255)
aTCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTc < 1:251526/76‑1 (MQ=255)
tCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCa < 2:3091776/76‑1 (MQ=255)
tCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCa < 1:4535798/76‑1 (MQ=255)
tCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCa < 1:6022747/76‑1 (MQ=255)
ggTACCAGGATTCCCGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACt < 1:3211530/76‑1 (MQ=255)
ggTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACt < 2:5497245/76‑1 (MQ=255)
ggTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACAATTAGTCAca > 2:1434383/1‑75 (MQ=255)
gTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTg > 2:3777028/1‑76 (MQ=255)
gTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTg > 1:1778202/1‑76 (MQ=255)
tACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGa > 1:3286094/1‑76 (MQ=255)
tACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGa < 1:6229909/76‑1 (MQ=255)
tACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGa > 1:5192632/1‑76 (MQ=255)
tACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGa > 1:388067/1‑76 (MQ=255)
aCCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGaa > 2:676577/1‑76 (MQ=255)
aCCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGaa < 2:5694476/76‑1 (MQ=255)
ccAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAg > 2:2437464/1‑76 (MQ=255)
gaGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGt < 2:3542980/75‑1 (MQ=255)
aGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTa < 1:4180573/76‑1 (MQ=255)
aGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTa > 1:948007/1‑76 (MQ=255)
cACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTc > 2:1353460/1‑76 (MQ=255)
aCGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCt < 1:3355269/76‑1 (MQ=255)
aCGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCt > 2:5308031/1‑76 (MQ=255)
cgttAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTg < 1:1659663/73‑1 (MQ=255)
cGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTg < 1:2232332/76‑1 (MQ=255)
ggTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGa > 2:3463039/1‑76 (MQ=255)
gTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGAc > 2:5905805/1‑76 (MQ=255)
tAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACt > 1:4086472/1‑76 (MQ=255)
aGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACtt < 1:1015550/76‑1 (MQ=255)
gCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACttt > 1:3955735/1‑76 (MQ=255)
ccAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTc > 2:73960/1‑76 (MQ=255)
cAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTcc > 2:6140522/1‑76 (MQ=255)
cAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTcc < 2:1217312/76‑1 (MQ=255)
cAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTcc < 1:2500066/76‑1 (MQ=255)
aGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCa < 1:1349399/76‑1 (MQ=255)
aGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCa < 2:1485041/76‑1 (MQ=255)
aGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCa > 2:2133010/1‑76 (MQ=255)
gCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAg > 2:2606183/1‑76 (MQ=255)
gCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAg < 2:4561144/76‑1 (MQ=255)
cTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGc < 1:225538/76‑1 (MQ=255)
cGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTc > 1:5815287/1‑76 (MQ=255)
cGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTc > 2:251361/1‑76 (MQ=255)
cGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTc > 2:4398874/1‑76 (MQ=255)
cGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTc < 2:2420476/76‑1 (MQ=255)
gCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCa < 1:2848418/76‑1 (MQ=255)
gCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCa > 2:2049081/1‑76 (MQ=255)
ccTATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCAt > 2:1720974/1‑76 (MQ=255)
tATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgc < 1:3492792/76‑1 (MQ=255)
tATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgc > 1:1891852/1‑76 (MQ=255)
tATGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgc > 2:4442307/1‑76 (MQ=255)
aTGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgcg < 1:5274742/76‑1 (MQ=255)
tGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgcgc > 1:5728471/1‑76 (MQ=255)
tGCGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgcgc > 1:3864601/1‑76 (MQ=255)
cGAGAAGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGcgccg > 2:1585256/1‑76 (MQ=255)
gagaAGTTTTGAAAGGATAAATATGTGCGCCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATgcgcgcc > 2:2981247/1‑73 (MQ=255)
aaGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGtt < 1:4646785/76‑1 (MQ=255)
aaGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGtt < 1:4838900/76‑1 (MQ=255)
aaGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGtt < 1:634041/76‑1 (MQ=255)
aaGTTTTGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGtt < 2:3343147/76‑1 (MQ=255)
ttttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTc > 1:5568815/1‑76 (MQ=255)
ttttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTc > 1:4330104/1‑76 (MQ=255)
ttttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTc > 1:4222718/1‑76 (MQ=255)
tttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCa > 1:3640499/1‑76 (MQ=255)
ttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCAt > 2:5757263/1‑76 (MQ=255)
ttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCAt < 2:5400974/76‑1 (MQ=255)
ttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCAt > 1:2239456/1‑76 (MQ=255)
ttGAAAGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCAt > 1:5876431/1‑76 (MQ=255)
aaaGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATcaa > 2:3049940/1‑74 (MQ=255)
aaGGATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAt < 2:5589304/76‑1 (MQ=255)
ggATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAttt > 2:6004839/1‑76 (MQ=255)
gATAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAtttt > 1:145573/1‑76 (MQ=255)
aTAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAttttt < 1:6163062/76‑1 (MQ=255)
aTAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAttttt < 2:3145754/76‑1 (MQ=255)
aTAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAttttt < 1:4575652/76‑1 (MQ=255)
aTAAATATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCAttttt > 2:2172996/1‑76 (MQ=255)
aaTATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTAtt > 2:428669/1‑76 (MQ=255)
aaTATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTAtt > 1:365217/1‑76 (MQ=255)
aaTATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTAtt > 2:6289334/1‑76 (MQ=255)
aaTATGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTAtt > 1:4995007/1‑76 (MQ=255)
atatGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTAttt > 2:6074715/1‑76 (MQ=255)
tatGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTc < 2:3640550/76‑1 (MQ=255)
tatGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTc > 2:3268016/1‑76 (MQ=255)
tatGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTc > 2:1128961/1‑76 (MQ=255)
atGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCt > 2:5365956/1‑76 (MQ=255)
atGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCt > 1:5436215/1‑76 (MQ=255)
atGTGCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCt < 1:2205944/76‑1 (MQ=255)
tgtgCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTg < 1:2721261/76‑1 (MQ=255)
tgtgCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTg > 2:5604546/1‑76 (MQ=255)
tgtgCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTg < 2:3333179/76‑1 (MQ=255)
tgCACCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGc > 1:1022562/1‑76 (MQ=255)
tgCACCATTAGTCACTGAAGTAGCGGTCTAACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGc > 1:200276/1‑76 (MQ=255)
|
CGGTGAGATCGGTACCAGGATTCACGGTAGCCAGCTCGCCTATGCGAGAAGTTTTGAAAGGATAAATATGTGCGCCATTAGTCACTGAAGTAGCGGTCTGACTTTCCAGCTCATGCGCCGCGTTGTCATCCATTTTTATTTCTGGC > REL606/1936242‑1936387
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
