Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A108 F1 I1 R1
|
80 |
195.1 |
12639756 |
93.3% |
11792892 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,340,143 |
G→A |
P200P (CCG→CCA) |
yhdJ → |
predicted methyltransferase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,340,143 | 0 | G | A | 98.4%
| 731.4
/ 0.9
| 185 | P200P (CCG→CCA) | yhdJ | predicted methyltransferase |
| Reads supporting (aligned to +/- strand): ref base G (2/1); new base A (98/84); total (100/85) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.18e-01 |
Only 100 of 192 total aligned reads displayed.
GGGTAACGTCTGGGATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCGGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGTTTGCCGGT > REL606/3340071‑3340215
|
gggTANNGTCTGGGATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAANACCAGaa > 2:1067833/1‑76 (MQ=255)
ggTACCGTCTGGGATTTCCCGCGCGTGCGTTATTTAATGGATAAATATGAGAACCACCCGACGCAAAAACCAGAAg < 1:1772848/76‑1 (MQ=255)
ggTAACGTCTGGGATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAg > 2:1871400/1‑76 (MQ=255)
tAACGTCTGGGATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGcc > 2:37350/1‑76 (MQ=255)
aaCGTCTGGGATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCt > 1:1007738/1‑76 (MQ=255)
aCGTCTGGGATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCtt < 2:4691802/76‑1 (MQ=255)
cGTCTGGGATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTa > 2:5236335/1‑76 (MQ=255)
cGTCTGGGATTTTCCGCGCGTGCGTTATTTAATGAAACAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTa < 1:2761842/76‑1 (MQ=255)
tcggggATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACt < 2:2571208/73‑1 (MQ=255)
tCTGGGATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACt > 1:2540784/1‑76 (MQ=255)
cTGGGATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTg < 1:5598796/76‑1 (MQ=255)
cTGGGATTTTCCGCGCGTGCGTTATTTAAGGGATAAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTg < 2:1217401/76‑1 (MQ=255)
ggggTTTTCCGCGCGTGCGTTATTTAAGGGATGAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTGaa < 1:1679436/76‑1 (MQ=255)
gggATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGaa > 2:1722826/1‑76 (MQ=255)
gATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAAc < 2:2972888/76‑1 (MQ=255)
aTTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACg > 1:5890930/1‑76 (MQ=255)
aTTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACg < 1:4579906/76‑1 (MQ=255)
aTTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAAAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACg < 2:4738694/76‑1 (MQ=255)
aTTTTCCGCACGTGCTTTATTTAATGTAGAAATAGGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACg < 1:3138799/76‑1 (MQ=255)
ttttCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGc > 1:613667/1‑76 (MQ=255)
ttttCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGc > 1:297386/1‑76 (MQ=255)
ttCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCat > 1:3542189/1‑76 (MQ=255)
ccGCGCGTGCGTTATTTAATGGATGAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCatta < 2:3966330/76‑1 (MQ=255)
ccGCGCGTGCGTTATTTAAGGGATGAATATGAAACCCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCatta < 2:2790998/76‑1 (MQ=255)
cgcgcgTGCGTTATTTAATGGATGAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCattat < 2:3988662/76‑1 (MQ=255)
cgcgcgTGCGTTATTTAATGGATAAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCattat < 1:5757404/76‑1 (MQ=255)
cgtgcgtTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATtctc < 2:5649853/76‑1 (MQ=255)
cgtgcgtTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATtctc > 2:2181675/1‑76 (MQ=255)
gtgcgtTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCg > 2:1309987/1‑76 (MQ=255)
gtgcgtTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCg > 1:5609718/1‑76 (MQ=255)
tgcgtTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGc > 1:5237302/1‑76 (MQ=255)
cgtTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCct > 1:3035628/1‑76 (MQ=255)
cgtTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCct > 1:2903552/1‑76 (MQ=255)
cgtTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCct > 1:4485157/1‑76 (MQ=255)
cgtTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCct > 2:3801232/1‑76 (MQ=255)
gtTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCctc > 2:5863464/1‑76 (MQ=255)
ttATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCctct > 1:471888/1‑76 (MQ=255)
tATTTAATTGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCtt > 1:1820212/1‑76 (MQ=255)
tATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCtt > 1:862414/1‑76 (MQ=255)
tATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCtt > 2:1642055/1‑76 (MQ=255)
aTTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTc > 2:3068879/1‑76 (MQ=255)
aTTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTc > 1:3443791/1‑76 (MQ=255)
aTTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTc > 2:4655548/1‑76 (MQ=255)
aTTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTc > 2:1713024/1‑76 (MQ=255)
aTTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTc > 2:4133560/1‑76 (MQ=255)
aTTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTc > 1:428039/1‑76 (MQ=255)
aTTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTc > 1:522876/1‑76 (MQ=255)
tttAATGGATGAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTcc < 2:4453426/76‑1 (MQ=255)
tttAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTcc > 1:1375716/1‑76 (MQ=255)
tttAAGGGATGAATATGAGACCCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTcc < 2:320050/76‑1 (MQ=255)
tttAAGGGATGAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTcc < 2:5989434/76‑1 (MQ=255)
tttAAGGGAGGAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTcc < 2:644113/76‑1 (MQ=255)
ttaaaTGGATGAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTcc < 2:741356/73‑1 (MQ=255)
ttAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCa > 1:5670646/1‑76 (MQ=255)
ttAATGGATGAATAGGAGACCCCCCCGACGCAAAAACCGGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCa < 1:1389119/76‑1 (MQ=255)
ttAAGGGATGAATATGAAAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCa < 2:1367877/76‑1 (MQ=255)
tAATGGATGAATATGAGACCCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCaa < 2:2024814/76‑1 (MQ=255)
tAATGGATGAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCaa < 1:2687573/76‑1 (MQ=255)
tAATGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCaa > 1:4274284/1‑76 (MQ=255)
aaTGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAAc > 2:4809083/1‑76 (MQ=255)
aaTGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAAc > 2:2895712/1‑76 (MQ=255)
aTGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGACACGCATTATTCTCGCCTCTTCCAAcc > 2:1413223/1‑76 (MQ=255)
aTGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAAcc > 2:5730484/1‑76 (MQ=255)
tGGATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAAccc > 1:3774741/1‑76 (MQ=255)
tGGATGAATATGAAACCCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAAccc < 2:3928607/76‑1 (MQ=255)
ggATGAATATGAGAACCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCa < 2:594485/76‑1 (MQ=255)
ggATGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCa > 1:1584278/1‑76 (MQ=255)
gaggAATAGGAAAACCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAg < 2:1954416/73‑1 (MQ=255)
gATGAATAGGAGACCCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAg < 1:733359/76‑1 (MQ=255)
aTGAATATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAgg > 2:4060594/1‑76 (MQ=255)
aaTATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGa > 2:618459/1‑76 (MQ=255)
aaTATGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGa > 1:962800/1‑76 (MQ=255)
atagGAGACCCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGat < 1:2133831/76‑1 (MQ=255)
tatGAGACCCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGata < 2:2076305/76‑1 (MQ=255)
tatGAGAACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGata > 2:1503452/1‑76 (MQ=255)
atGAGACCCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGatat < 2:4341459/76‑1 (MQ=255)
aggagaCCCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGatat < 1:3732986/74‑1 (MQ=255)
gaagaCCCCCCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATc < 1:537273/74‑1 (MQ=255)
agaACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGt > 1:5107727/1‑76 (MQ=255)
agaACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGt > 2:2322684/1‑76 (MQ=255)
gaACCACCCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGtt > 1:5055866/1‑76 (MQ=255)
acccccCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTtct < 1:1151676/76‑1 (MQ=255)
acccccCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTtct < 1:1433375/76‑1 (MQ=255)
accaccCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTtct > 2:5530038/1‑76 (MQ=255)
ccccccGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTtctc < 1:4025952/73‑1 (MQ=255)
ccaccCGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTtctc > 1:4740679/1‑76 (MQ=255)
cccccGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCg < 2:5370004/74‑1 (MQ=255)
cccGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGAc > 1:394074/1‑76 (MQ=255)
cGACGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGAccc < 1:4923358/76‑1 (MQ=255)
cGCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGtt < 2:4938271/76‑1 (MQ=255)
gCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGttt < 2:3396841/76‑1 (MQ=255)
gCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGttt > 1:905648/1‑76 (MQ=255)
gCAAAAACCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGttt < 2:4246023/76‑1 (MQ=255)
aaaaaCCAGAAGCCTTACTAAAACGAATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGTTTGc < 1:4216483/76‑1 (MQ=255)
aaaaCCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGTTTGcc > 2:255732/1‑76 (MQ=255)
aaaCCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGTTTGCCg < 2:1268125/76‑1 (MQ=255)
aaaCCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGTTTGCCg > 2:4921533/1‑76 (MQ=255)
aaaCCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGTTTGCCg > 2:4423265/1‑76 (MQ=255)
ctgggAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGTTTGCCGGt < 1:805121/73‑1 (MQ=255)
aCCAGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGTTTGCCGGt < 1:2430464/76‑1 (MQ=255)
|
GGGTAACGTCTGGGATTTTCCGCGCGTGCGTTATTTAATGGATGAATATGAGAACCACCCGACGCAAAAACCGGAAGCCTTACTGAAACGCATTATTCTCGCCTCTTCCAACCCAGGCGATATCGTTCTCGACCCGTTTGCCGGT > REL606/3340071‑3340215
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
