Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A53 F1 I1 R1
|
17 |
63.8 |
4051746 |
97.3% |
3942348 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
2,298,075 |
Δ9 bp |
coding (1000‑1008/1359 nt) |
glpT ← |
sn‑glycerol‑3‑phosphate transporter |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 2298074 | 1 (0.020) | 54 (0.890) |
43/142 |
0.4 |
98.2% |
coding (1009/1359 nt) |
glpT |
sn‑glycerol‑3‑phosphate transporter |
| ? | REL606 |
2298084 = |
1 (0.020) | coding (999/1359 nt) |
glpT |
sn‑glycerol‑3‑phosphate transporter |
CGTAGATCAGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2297996‑2298074
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCA > REL606/2298084‑2298158
CGTAGATCAGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAAC < 1:1251597/76‑1
CGTAGATCAGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAAC < 1:784012/76‑1
CGTAGATCAGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAAC > 1:1424478/1‑76
TAGATCAGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGA > 1:1159520/1‑76
CAGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTC > 2:1018351/1‑76
AGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCA < 1:478729/76‑1
AGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCA < 2:47858/76‑1
AAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCA > 1:1433646/1‑76
GCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGT < 2:673998/76‑1
ATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCA < 2:1853768/76‑1
ATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCA > 1:911441/1‑76
TAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCAT > 2:1930374/1‑76
AACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATA > 1:1973495/1‑76
CATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAA < 2:326054/76‑1
ATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAA < 2:1410924/76‑1
TACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAAC > 1:303551/1‑76
AATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCG < 1:100154/76‑1
ATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCTTAAAGAAAACGCCGG > 2:512993/1‑76
TCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGT > 1:261685/1‑76
CATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTT > 1:1066996/1‑76
ATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTG < 1:1389430/76‑1
ATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCC > 1:1777277/1‑76
cgcCGGTTGGGTTCCCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCC < 1:569279/73‑1
gCGGTTGGTTTCCCTGCGGGGTTCATCCAGTAACCGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCAC < 1:1135051/75‑1
ACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCAC < 1:1686014/76‑1
ACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCAC < 1:552393/76‑1
CGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACG > 2:1977581/1‑76
GGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGG > 1:546461/1‑76
TTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTT < 2:1642820/76‑1
TTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTT > 1:677724/1‑76
TTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTT < 1:1995710/76‑1
TTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTT > 1:1818861/1‑76
TTGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTT > 1:1513368/1‑76
TGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTG > 1:1281600/1‑76
TGGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTG > 2:169510/1‑76
GGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGC > 2:1095556/1‑76
GGGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGC < 2:647500/76‑1
GGTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCC < 2:122009/76‑1
GTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCA > 1:826300/1‑76
GTTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCA < 2:1657549/76‑1
TTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCAC > 2:1436706/1‑76
TTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCAC < 2:319190/76‑1
TTACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCAC < 2:233260/76‑1
ACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGG > 2:1953069/1‑76
ACCTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGG < 1:1769576/76‑1
CTGCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAA < 2:964557/76‑1
GCCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGA < 1:265901/76‑1
CCGGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGAC < 1:1319378/76‑1
GGGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTT > 1:1868710/1‑76
GGTTCATCCAGTAAACGATGGTCACCAGTGTCATAGAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTT < 1:488291/76‑1
GGTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTT < 2:598549/76‑1
GTTCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTA > 1:1692803/1‑76
TCATCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATC > 2:1171052/1‑76
TCCAGTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGA < 2:1074194/76‑1
GTAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATC < 2:1536678/76‑1
TAAACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCC < 2:1941777/76‑1
AACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAG < 1:1912363/76‑1
AACGATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAG < 1:1952260/76‑1
ATGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGC > 1:380833/1‑76
TGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCA > 2:460460/1‑76
CGTAGATCAGGAAGCCGATAACAATCATACAAATCATATCGACGGTTGGGTTACCTGCCGGGTTCATCCAGTAAACGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/2297996‑2298074
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgatGGTCACCAGTGTCATAAAGAAAACGCCGGTTGCCCCACGGTTGCCACGGAAGACTTTATCCGACATCCAGCCGCA > REL606/2298084‑2298158
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
