mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 296,977 | G→A | E191K (GAA→AAA) | ykgG → | predicted transporter |
| RA | 475,286 | A→C | L7R (CTT→CGT) | ybaL ← | predicted transporter with NAD(P)‑binding Rossmann‑fold domain |
| RA | 650,345 | A→C | F153V (TTT→GTT) | mrdA ← | transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2) |
| RA | 1,329,516 | C→T | H33Y (CAC→TAC) | topA → | DNA topoisomerase I |
| JC | 1,733,297 | (CGTATGAA)1→2 | coding (333/1413 nt) | pykF → | pyruvate kinase |
| RA | 2,193,779 | G→T | L143I (CTT→ATT) | yeiB ← | conserved inner membrane protein |
| JC | 2,298,075 | Δ9 bp | coding (1000‑1008/1359 nt) | glpT ← | sn‑glycerol‑3‑phosphate transporter |
| MC JC | 3,014,068 | (AAC)3→2 | coding (649‑651/1137 nt) | ECB_02815 → | Capsule polysaccharide export inner‑membrane protein kpsE |
| MC JC | 3,228,513 | Δ46 bp | coding (12‑57/861 nt) | yraL ← | predicted methyltransferase |
| JC JC | 3,570,726 | IS150 (–) +3 bp | intergenic (‑317/‑72) | yhiO ← / → uspA | universal stress protein UspB/universal stress global response regulator |
| RA | 3,762,741 | A→T | K662I (AAA→ATA) | spoT → | bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase |
| RA | 3,875,632 | (T)7→8 | intergenic (‑66/+287) | glmU ← / ← atpC | bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon |
| RA | 3,876,073 | T→C | D89G (GAT→GGT) | atpC ← | F0F1 ATP synthase subunit epsilon |
| MC JC | 3,894,997 | Δ6,934 bp | IS150‑mediated | rbsD–[yieO] | rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
| JC | 4,108,659 | (TATTT)1→2 | intergenic (‑157/‑120) | metJ ← / → metB | transcriptional repressor protein MetJ/cystathionine gamma‑synthase |
| RA | 4,166,065 | C→T | P369S (CCG→TCG) | rpoC → | DNA‑directed RNA polymerase subunit beta' |
| JC JC | 4,524,522 | IS186 (+) +6 bp | coding (494‑499/549 nt) | fimA → | major type 1 subunit fimbrin (pilin) |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | REL606 | 589608–590469 | 593379 | 2911–3772 | 23 [20] | [20] 21 | [insK‑1]–[fepA] | [insK‑1],[insB‑7],insA‑7,insK‑1,hokE,insL‑3,entD,[fepA] |
| * | * | ÷ | REL606 | 593571 | 619840–619116 | 25546–26270 | 23 [20] | [20] 22 | [fepA]–insA‑8 | [fepA],fes,ybdZ,entF,fepE,fepC,fepG,fepD,ybdA,fepB,entC,entE,entB,entA,ybdB,cstA,cstA,ybdD,ybdH,ybdL,ybdM,ybdN,insB‑8,insA‑8 |