Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A53 F1 I1 R1
|
17 |
63.8 |
4051746 |
97.3% |
3942348 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC JC |
REL606 |
3,570,726 |
IS150 (–) +3 bp |
intergenic (‑317/‑72) |
yhiO ← / → uspA |
universal stress protein UspB/universal stress global response regulator |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3570726 = | 1 (0.020) | 87 (1.400) |
59/146 |
0.0 |
98.8% |
intergenic (‑317/‑74) |
yhiO/uspA |
universal stress protein UspB/universal stress global response regulator |
| ? | REL606 |
3651091 = |
NA (NA) | noncoding (1/1443 nt) |
IS150 |
repeat region |
| * |
? |
REL606 |
= 3570728 | 1 (0.020) | 66 (1.030) |
52/150 |
0.2 |
98.5% |
intergenic (‑319/‑72) |
yhiO/uspA |
universal stress protein UspB/universal stress global response regulator |
| ? | REL606 |
= 3652533 |
NA (NA) | noncoding (1443/1443 nt) |
IS150 |
repeat region |
Only 100 of 104 total aligned reads displayed.
TAGTGTTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3570800‑3570726
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAG > REL606/3651091‑3651167
TAGTGTTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCT > 2:842479/1‑76
TAGTGTTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCT > 2:209097/1‑76
AGTGTTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTG < 2:882406/76‑1
AGTGTTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTG > 1:424773/1‑76
GTGTTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGT < 1:936308/76‑1
TGTTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTA < 2:1874972/76‑1
GTTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTAC < 2:657298/76‑1
TTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACT < 2:561709/76‑1
TTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACT > 1:294189/1‑76
TTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACT > 1:1733439/1‑76
TACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTG > 2:991671/1‑76
CTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCA < 2:1943140/76‑1
TTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTTTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCA > 1:1266149/1‑76
CATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTT < 1:1829707/76‑1
ATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTT < 2:958246/76‑1
ATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTT > 1:1698963/1‑76
ATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTT < 2:1864202/76‑1
AAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGT > 2:628707/1‑76
AAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGT > 2:281988/1‑76
AAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGT > 2:1618116/1‑76
AAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTT < 1:306098/76‑1
GTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGG < 2:759169/76‑1
GTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGG < 2:584969/76‑1
TTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGt > 1:1860513/1‑75
TGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGAC > 2:90868/1‑76
GTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGGCG > 1:238007/1‑76
GTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACG > 1:861914/1‑76
CGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGAT < 2:877671/76‑1
CGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGAT < 1:1262885/76‑1
ATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGA > 1:1335859/1‑76
TGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAA > 2:1663755/1‑76
TGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAA < 1:1898189/76‑1
GACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAA > 2:667732/1‑76
ACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAAT < 2:1334595/76‑1
CTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATG > 1:900197/1‑76
CTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATG > 1:500910/1‑76
TGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGG > 1:335166/1‑76
TGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGG > 2:1011443/1‑76
GGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGA > 2:374709/1‑76
GGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGA < 2:1751004/76‑1
GGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGA > 1:1377426/1‑76
GGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGA < 1:1999782/76‑1
GGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGA > 2:868686/1‑76
CCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAAT < 2:766171/76‑1
CAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 2:561503/76‑1
CAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:475239/76‑1
CAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATA < 1:475256/76‑1
AGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG < 1:100903/76‑1
AGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAG < 1:93078/76‑1
GCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGC < 2:1809578/76‑1
CTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCC > 1:693273/1‑76
TAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCC > 1:1645566/1‑76
GCGTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCT < 2:1613658/76‑1
GTTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAA > 1:577891/1‑76
TTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > 2:1275263/1‑76
TTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > 1:1724659/1‑76
TTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAAT > 2:1947400/1‑76
TTTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCACCTAAT < 1:1024946/76‑1
TTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 1:2005690/76‑1
TTCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATA < 1:573/76‑1
TCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTTGACGATGAAATGGAATAGCCCCTAATAT > 1:1313353/1‑76
TCTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATAT < 2:597386/76‑1
CTTGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATG > 2:1630635/1‑76
TGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCGCTAATATGTC < 1:695403/76‑1
TGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTC > 2:1964798/1‑76
TGTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTC > 1:665869/1‑76
GTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCA < 1:1905150/76‑1
GTGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCA < 2:925902/76‑1
TGCCGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAA < 1:1708360/76‑1
CGTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTCGACGATGAAATGGAATAGCCCCTAATATGTCAAAGC > 2:885794/1‑76
GTTACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCC < 1:1575980/76‑1
TACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAA > 2:1685276/1‑76
TACGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAA < 1:55106/76‑1
CGTCACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAA < 1:1107491/76‑1
CACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATAC > 2:876290/1‑76
ACCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACC < 2:229089/76‑1
CCCGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCC > 2:346854/1‑76
CGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTT > 2:1001982/1‑76
CGCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTT > 1:585591/1‑76
GCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT < 2:355095/76‑1
GCGTCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTT < 1:1944120/76‑1
TCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA > 1:1850014/1‑76
TCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA < 1:1013806/76‑1
TCCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGA > 1:673917/1‑76
CCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA < 1:783623/76‑1
CCTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAA > 2:638858/1‑76
CTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAn < 1:157767/76‑2
CTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAA > 1:670089/1‑76
CTGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAA > 1:538798/1‑76
TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAA > 2:947846/1‑76
TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAA < 2:554180/76‑1
TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAA < 1:310897/76‑1
TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAA < 1:1351743/76‑1
TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAA > 2:1499785/1‑76
TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAA < 2:2016126/76‑1
GTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAG < 1:1437464/76‑1
GTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAG < 1:1000932/76‑1
GTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAG > 2:1178995/1‑76
GTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAG < 2:1445968/76‑1
GTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAG > 2:1746199/1‑76
TAGTGTTACTCCTTCCATAAAGTTGTCGATGACTGGCCAGCTAGCGTTTCTTGTGCCGTTACGTCACCCGCGTCCtg‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3570800‑3570726
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑TGTACTGCACCCATTTTGTTGGACGATGAAATGGAATAGCCCCTAATATGTCAAAGCCAAAATACCCTTTTGAAAAG > REL606/3651091‑3651167
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
