Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A82 F1 I1 R1
|
16 |
52.8 |
3323890 |
97.1% |
3227497 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
4,180,200 |
T→G |
V8G (GTG→GGG) |
yjaH → |
hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 4,180,200 | 0 | T | G | 98.0%
| 201.5
/ ‑3.9
| 49 | V8G (GTG→GGG) | yjaH | hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base T (1/0); new base G (27/21); total (28/21) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
TGTTTCTGGCAAGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGTGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGTTTCTCACTGCCTGTAG > REL606/4180129‑4180272
|
tGTTTCTGGCAAGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGtt > 1:1059140/1‑76 (MQ=255)
tGTTTCTGGCAAGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGtt < 2:1185140/76‑1 (MQ=255)
gTTTCTGGCAAGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGttt > 1:552281/1‑76 (MQ=255)
tttCTGGCAAGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTc > 1:1322110/1‑76 (MQ=255)
tttCTGGCAAGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTc > 1:1034613/1‑76 (MQ=255)
ttCTGGCAAGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCa < 2:1227573/76‑1 (MQ=255)
ttCTGGCAAGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCa > 1:147322/1‑76 (MQ=255)
cTGGCAAGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCAcc < 1:47236/76‑1 (MQ=255)
cAAGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCtt > 1:288201/1‑76 (MQ=255)
aGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCtttt < 2:1514384/76‑1 (MQ=255)
aGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCtttt < 1:1488223/76‑1 (MQ=255)
ggCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTg < 2:975706/76‑1 (MQ=255)
ggCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTg < 2:1260197/76‑1 (MQ=255)
gCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGt < 1:1223072/76‑1 (MQ=255)
gCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGt > 1:638933/1‑76 (MQ=255)
aCTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCt > 2:1316791/1‑76 (MQ=255)
aCTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCt > 1:940647/1‑76 (MQ=255)
cTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCtt > 1:583027/1‑76 (MQ=255)
tGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCttt > 1:511550/1‑76 (MQ=255)
tGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCttt > 2:967651/1‑76 (MQ=255)
aaGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTg > 1:235857/1‑76 (MQ=255)
aaGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTg < 2:1541887/76‑1 (MQ=255)
aaGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTg > 2:1247154/1‑76 (MQ=255)
gACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGc > 2:1190517/1‑76 (MQ=255)
gTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGAt > 1:1237412/1‑76 (MQ=255)
taagtaagATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCa < 1:905175/76‑1 (MQ=255)
aagtaagATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCAt > 2:538233/1‑76 (MQ=255)
gtaagATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTg < 1:106258/76‑1 (MQ=255)
taagATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGa > 2:1601660/1‑76 (MQ=255)
aagATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGAt < 2:983460/76‑1 (MQ=255)
gCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGc > 2:556234/1‑76 (MQ=255)
gCGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGc > 1:698919/1‑76 (MQ=255)
cGTGGCAGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCa < 1:1294849/76‑1 (MQ=255)
ggCAGTGAACAGTTTTAACGAAGGGGGGGGTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAggg > 1:899065/1‑75 (MQ=255)
aGTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTgcg > 1:1099013/1‑76 (MQ=255)
gTGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTgcgc < 2:1369199/76‑1 (MQ=255)
tGAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGGGGGCt > 1:844103/1‑76 (MQ=255)
gAACAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCGGGTGCGCTg < 2:1497119/76‑1 (MQ=255)
cAGTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGttt < 2:147322/76‑1 (MQ=255)
aGTTTTAACGAAGGGGTGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGTTtc > 2:1550894/1‑76 (MQ=255)
gTTTTAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGTTtct < 2:1562077/76‑1 (MQ=255)
tttAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGTTTCTCa < 2:1001444/76‑1 (MQ=255)
ttAACGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGGGCGCTGTTTCTCAc > 1:1222200/1‑76 (MQ=255)
tAACGAAGGGGGGGTTTCACCCCTTGTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGTTTCTCACt < 1:1486013/76‑1 (MQ=255)
aaCGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGGGGGCTGTTTCTCACTg > 2:220090/1‑76 (MQ=255)
cGAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGTTTCTCACTGcc > 1:243657/1‑76 (MQ=255)
gAAGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGTTTCTCACTGCCt < 2:794609/76‑1 (MQ=255)
aaGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGTTTCTCACTGCCTg < 1:1200611/76‑1 (MQ=255)
aaGGGGGGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGTTTCTCACTGCCTg > 2:587752/1‑76 (MQ=255)
ggggggTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGTTTCTCACTGCCTGTAg < 2:1435134/76‑1 (MQ=255)
|
TGTTTCTGGCAAGGCACTGAAAGACGCAGTTAAGTAAGATTGCGTGGCAGTGAACAGTTTTAACGAAGGGGTGGTTTCACCCCTTTTGTCTTTCTGGCGTCGATCATTGATGCTGGCAGGTGCGCTGTTTCTCACTGCCTGTAG > REL606/4180129‑4180272
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
