Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A42 F1 I1 R1
|
17 |
53.4 |
3386926 |
97.4% |
3298865 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,147,776 |
G→A |
intergenic (+71/+8) |
rpoD → / ← ygjF |
RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,147,776 | 0 | G | A | 100.0%
| 191.5
/ NA
| 50 | intergenic (+71/+8) | rpoD/ygjF | RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (35/15); total (35/15) |
CGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTG > REL606/3147707‑3147848
|
cGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGttt > 2:744697/1‑76 (MQ=255)
gTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGttttt > 2:1675456/1‑76 (MQ=255)
tAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGtttttt > 1:1344273/1‑76 (MQ=255)
aGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTa < 1:1298728/76‑1 (MQ=255)
aGGCCGGATCAGGCGTTACGCCGCAACCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTa > 2:494415/1‑76 (MQ=255)
ggCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTAt > 1:1194919/1‑76 (MQ=255)
ccGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCg < 1:142796/76‑1 (MQ=255)
aTCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCa > 2:45022/1‑76 (MQ=255)
aGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGc > 2:1346908/1‑76 (MQ=255)
aGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGc > 2:1628897/1‑76 (MQ=255)
ggCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCa > 2:1107321/1‑76 (MQ=255)
ggCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCa > 2:708812/1‑76 (MQ=255)
cGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACt < 2:70924/76‑1 (MQ=255)
gTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTa < 1:1158721/76‑1 (MQ=255)
tACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTAcc > 1:956541/1‑76 (MQ=255)
aCGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCa < 1:1504145/76‑1 (MQ=255)
gcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGcc > 2:249956/1‑76 (MQ=255)
gcACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGcc > 2:721667/1‑76 (MQ=255)
cACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCt > 2:1330893/1‑76 (MQ=255)
aCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTg > 2:157096/1‑76 (MQ=255)
aCCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTg > 2:1209508/1‑76 (MQ=255)
ccGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGt > 2:1313468/1‑76 (MQ=255)
cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCg > 1:1216724/1‑49 (MQ=255)
cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCg < 2:1216724/49‑1 (MQ=255)
cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAg > 2:129176/1‑76 (MQ=255)
cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAg > 2:1271231/1‑76 (MQ=255)
cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAg < 1:748509/76‑1 (MQ=255)
cACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAg < 1:1200815/76‑1 (MQ=255)
tAGGCCCTCTGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTc > 2:926497/1‑76 (MQ=255)
aGGCCCTCTGCACAAACGCCACNTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTcg > 2:233856/1‑76 (MQ=255)
ctctGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATa < 1:1350428/76‑1 (MQ=255)
ctGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACg > 1:1661327/1‑76 (MQ=255)
ctGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACg > 2:297630/1‑76 (MQ=255)
ctGCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACg > 2:685417/1‑76 (MQ=255)
gCACAAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCt > 1:652629/1‑76 (MQ=255)
cacaAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCtt > 2:614963/1‑76 (MQ=255)
acaAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTc < 2:1122784/76‑1 (MQ=255)
caAACGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCa < 1:926809/76‑1 (MQ=255)
aaaCGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCaa > 1:803781/1‑76 (MQ=255)
aaCGCCACCTTTTCGGTAGCGTNTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAc > 2:228611/1‑76 (MQ=255)
aCGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAAcc < 2:1524250/76‑1 (MQ=255)
cGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCa > 2:1257797/1‑76 (MQ=255)
cGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCa > 2:634498/1‑76 (MQ=255)
cGCCACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCa > 2:118251/1‑76 (MQ=255)
ccACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGt > 1:640222/1‑76 (MQ=255)
cACCTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGtt > 2:1285623/1‑76 (MQ=255)
cTTTTCGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTtct < 2:804772/76‑1 (MQ=255)
cGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGt > 1:281041/1‑76 (MQ=255)
cGGTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGt < 2:145366/76‑1 (MQ=255)
ggTAGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTg < 1:323940/76‑1 (MQ=255)
ggTAGCGTTTTGTATCGCCCACGCCCTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTg < 1:323936/76‑1 (MQ=255)
|
CGGTAGGCCGGATCAGGCGTTACGCCGCACCCGGCACTAGGCCCTCTGCACAAACGCCACCTTTTCGGTGGCGTTTTTTATCGCCCACGCACTACCAGCGCCTGGTCCAGCTCGCGATACGCTTCAACCAGTTTCTCCAGTG > REL606/3147707‑3147848
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
