Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F1 I1 R1
|
18 |
29.2 |
1933165 |
95.1% |
1838439 |
75.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
3,147,777 |
Δ19 bp |
|
[ygjF] |
[ygjF] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
3147777 |
3147795 |
19 |
31 [0] |
[0] 31 |
[ygjF] |
[ygjF] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3147776 | 0 (0.000) | 31 (1.060) |
25/148 |
0.2 |
100% |
intergenic (+71/+8) |
rpoD/ygjF |
RNA polymerase sigma factor/G/U mismatch‑specific DNA glycosylase |
| ? | REL606 |
3147796 = |
0 (0.000) | coding (495/507 nt) |
ygjF |
G/U mismatch‑specific DNA glycosylase |
GATK/CNVnator alignment
N/A
