breseq  version 0.33.1  revision 8505477f25b3 mutation predictions | marginal predictions | summary statistics | genome diff | command line log

Predicted mutations
evidence	position	mutation	annotation	gene	description
RA	2,849	T→G	F17C (TTT→TGT)	thrB →	homoserine kinase
RA	474,453	(A)6→7	coding (853/1677 nt)	ybaL ←	predicted transporter with NAD(P)‑binding Rossmann‑fold domain
RA	649,601	T→C	I401V (ATC→GTC)	mrdA ←	transpeptidase involved in peptidoglycan synthesis (penicillin‑binding protein 2)
RA	1,290,312	+G	coding (277/1014 nt)	hnr →	response regulator of RpoS
RA	1,329,516	C→T	H33Y (CAC→TAC)	topA →	DNA topoisomerase I
JC	1,733,297	(CGTATGAA)1→2	coding (333/1413 nt)	pykF →	pyruvate kinase
RA	1,995,676	(C)8→7	intergenic (+103/+351)	yeeN → / ← asnW	hypothetical protein/tRNA‑Asn
RA	2,193,779	G→T	L143I (CTT→ATT)	yeiB ←	conserved inner membrane protein
JC JC	2,448,493	IS186 (–) +6 bp	intergenic (+24/+21)	nupC → / ← yfeA	nucleoside (except guanosine) transporter/predicted diguanylate cyclase
RA	3,028,040	A→T	L141* (TTA→TAA)	ECB_02828 ←	Polysialic acid transport protein kpsM
MC JC	3,147,777	Δ19 bp		[ygjF]	[ygjF]
RA	3,762,741	A→T	K662I (AAA→ATA)	spoT →	bifunctional (p)ppGpp synthetase II/ guanosine‑3',5'‑bis pyrophosphate 3'‑pyrophosphohydrolase
RA	3,785,519	G→A	E204K (GAA→AAA)	ECB_03523 →	TrbC‑like protein
RA	3,875,632	(T)7→8	intergenic (‑66/+287)	glmU ← / ← atpC	bifunctional N‑acetylglucosamine‑1‑phosphate uridyltransferase/glucosamine‑1‑phosphate acetyltransferase/F0F1 ATP synthase subunit epsilon
MC JC	3,894,997	Δ6,934 bp	IS150‑mediated	rbsD–[yieO]	rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO]
MC JC	3,912,149	Δ15 bp	coding (28‑42/99 nt)	ilvL →	ilvG operon leader peptide
RA	4,163,752	T→G	I966S (ATC→AGC)	rpoB →	DNA‑directed RNA polymerase subunit beta
JC JC	4,524,522	IS186 (+) +6 bp	coding (494‑499/549 nt)	fimA →	major type 1 subunit fimbrin (pilin)