mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.33.1 revision 8505477f25b3
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | REL606 | 1,875,483 | 0 | G | C | 26.4% | 113.9 / 34.0 | 53 | intergenic (+156/‑28) | yeaB/sdaA | predicted NUDIX hydrolase/L‑serine deaminase I |
| * | REL606 | 4,396,510 | 1 | . | G | 20.0% | 51.8 / 15.1 | 20 | coding (99/756 nt) | yjfQ | DNA‑binding transcriptional dual regulator |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | REL606 | = 1425702 | NA (NA) | 5 (0.180) | 4/140 | 3.3 | NA | coding (162/267 nt) | ynaE | predicted DNA‑binding transcriptional regulator |
| ? | REL606 | = 1425860 | NA (NA) | coding (4/267 nt) | ynaE | predicted DNA‑binding transcriptional regulator | |||||
| * | ? | REL606 | 3026635 = | 51 (1.720) | 5 (0.200) | 3/128 | 3.5 | 10.1% | coding (168/1377 nt) | ECB_02826 | hypothetical protein |
| ? | REL606 | 3026802 = | 46 (1.820) | coding (1/1377 nt) | ECB_02826 | hypothetical protein | |||||
| * | ? | REL606 | 3222287 = | 42 (1.420) | 3 (0.110) | 3/136 | 3.7 | 7.3% | intergenic (+29/‑372) | agaI/yraH | galactosamine‑6‑phosphate isomerase/predicted fimbrial‑like adhesin protein |
| ? | REL606 | 3222387 = | 38 (1.420) | intergenic (+129/‑272) | agaI/yraH | galactosamine‑6‑phosphate isomerase/predicted fimbrial‑like adhesin protein | |||||
| * | ? | REL606 | 3011924 = | 57 (1.920) | 3 (0.110) | 3/142 | 3.8 | 5.4% | intergenic (‑364/‑210) | ECB_02812/ECB_02813 | conserved hypothetical protein/hypothetical protein |
| ? | REL606 | 3012055 = | 51 (1.820) | intergenic (‑495/‑79) | ECB_02812/ECB_02813 | conserved hypothetical protein/hypothetical protein | |||||