Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A143 F1 I1 R1
|
16 |
39.8 |
2536279 |
96.2% |
2439900 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,755,753 |
(GTC)3→2 |
coding (722‑724/864 nt) |
yicC → |
hypothetical protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
3755750 = | 1 (0.030) | 33 (0.910) |
27/138 |
0.4 |
97.2% |
coding (719/864 nt) |
yicC |
hypothetical protein |
| ? | REL606 |
= 3755746 |
1 (0.030) | coding (715/864 nt) |
yicC |
hypothetical protein |
ACTTCGGCATTGATAGATTTCGACGCAAGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3755825‑3755750
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgacCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTGACATGCGCTTCCAGGCGGTCCAGTTCTTCGG < REL606/3755746‑3755675
ACTTCGGCATTGATAGATTTCGACGCAAGAGTGTTCGTCTCGCGGTTGAATTCCTGCATCATAAGGTCCAGACGAC < 1:65431/76‑1
CTTCGGCATTGATAGATTTCGACGCAAGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACC < 2:1116634/76‑1
TGATAGATTTCGACGCAAGAGTGTTCGACTCGCTGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTC > 1:762881/1‑76
TGATAGATTTCGACGCAAGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTC > 2:934132/1‑76
TGATAGATTTCGACGCAAGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTC < 2:415943/76‑1
ATAGATTTCGACGCAAGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTT < 1:506901/76‑1
ATAGATTTCGACGCAAGAGTGTTCCACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTT > 1:961785/1‑76
TAGATTTCGACGCAAGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTT < 2:69506/76‑1
AGATTTCGNCGCGAGAGTGTTCGAGTCTCGGTTGGATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTT < 2:201216/76‑1
ACGCAAGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAG < 2:817841/76‑1
GCAAGAGTGTTCGACTCGAGGTGGAATNCCNGCNTCTTAAANTCTAGATGACCAACGGCTTCTTTTTTCTTCAGAA < 1:1101566/76‑1
GCAAGAGTGTTCGACCCGCGGTTGAATTCCTGCCTCATAAAGTCCAGACGACCAACGGCTTNTTTTTTCTTCAGAA > 1:1093194/1‑76
CAAGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAAT > 2:990322/1‑76
CAAGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAAT < 2:665225/76‑1
CAAGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAAT < 1:395494/76‑1
AGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTTAGAATGT > 2:978105/1‑76
AGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGT > 1:770163/1‑76
AGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTG > 1:137871/1‑76
AGTGTTCGACTCGCCGTTGAATTGCTTCATCATAAAGTCCAGACGACCTACGGCTTCTTTTTTCTTCAGAATGTTG < 2:14662/76‑1
GTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGNATGTTGT < 2:1024726/76‑1
GTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGT < 2:1063389/76‑1
GTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGT < 2:1063409/76‑1
CGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTC < 2:242975/76‑1
CGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTC < 2:338229/76‑1
GACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTTTAGGTCT > 1:257575/1‑76
CTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCT < 2:766258/76‑1
GCGGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTG < 1:547106/76‑1
GGTTGAATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTGAC < 1:217052/76‑1
ATTCCTGCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTGACATGCGC < 1:626244/76‑1
GCATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTGACATGCGCTTCCAG < 2:59793/76‑1
ATCATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTGACATGCGCTTCCAGGC < 2:527843/76‑1
ATAAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTGACATGCGCTTCCAGGCGGT > 1:680333/1‑76
AAAGTCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTGACATGCGCTTCCAGGCGGTCC > 1:364711/1‑76
TCCAGACGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTGACATGCGCTTCCAGGCGGGCCAGTT > 2:381789/1‑76
CGACCAACGGCTTCTTTTTTCTTTAGAATGTTGTAGGTCTCTTTGACATGCGCTTCCAGGCGGTCCAGTTCTTCGG > 1:994560/1‑76
CGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTGACATGCGCTTCCAGGCGGTCCAGTTCTTCGG < 1:171810/76‑1
CGACCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTGACATGCGCTTCCAGGCGGTCCAGTTCTTCGG > 1:423603/1‑76
ACTTCGGCATTGATAGATTTCGACGCAAGAGTGTTCGACTCGCGGTTGAATTCCTGCATCATAAAGTCCAGACGAC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/3755825‑3755750
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑gacgacCAACGGCTTCTTTTTTCTTCAGAATGTTGTAGGTCTCTTTGACATGCGCTTCCAGGCGGTCCAGTTCTTCGG < REL606/3755746‑3755675
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
