Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A143 F1 I1 R1
|
16 |
39.8 |
2536279 |
96.2% |
2439900 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
3,894,997 |
Δ6,934 bp |
IS150‑mediated |
rbsD–[yieO] |
rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
3893604–3894994 |
3901930 |
6937–8327 |
15 [12] |
[0] 41 |
[insJ‑5]–[yieO] |
[insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3652533 | NA (NA) | 39 (1.020) |
33/146 |
0.2 |
100% |
noncoding (1443/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
3901931 = |
0 (0.000) | coding (489/1428 nt) |
yieO |
predicted multidrug or homocysteine efflux system |
GATK/CNVnator alignment
N/A
