Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F1 I1 R1
|
18 |
38.4 |
2430560 |
95.7% |
2326045 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| MC JC |
REL606 |
3,894,997 |
Δ6,991 bp |
IS150‑mediated |
rbsD–[yieO] |
rbsD, rbsA, rbsC, rbsB, rbsK, rbsR, [yieO] |
|
| | | | seq id |
start |
end |
size |
←reads |
reads→ |
gene |
description |
|---|
| * |
* |
÷ |
REL606 |
3893603–3894995 |
3901987 |
6993–8385 |
11 [10] |
[0] 47 |
[insJ‑5]–[yieO] |
[insJ‑5],insK‑5,rbsD,rbsA,rbsC,rbsB,rbsK,rbsR,[yieO] |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3894996 | NA (NA) | 46 (1.210) |
34/150 |
0.2 |
100% |
noncoding (1443/1443 nt) |
IS150 |
repeat region |
| ? | REL606 |
3901988 = |
0 (0.000) | coding (432/1428 nt) |
yieO |
predicted multidrug or homocysteine efflux system |
GATK/CNVnator alignment
N/A
