Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I1 R1
|
15 |
61.9 |
4096487 |
94.5% |
3871180 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
1,886,183 |
A→G |
intergenic (‑13/+656) |
yobF ← / ← yebO |
hypothetical protein/hypothetical protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 1,886,183 | 0 | A | G | 97.4%
| 296.5
/ ‑3.6
| 77 | intergenic (‑13/+656) | yobF/yebO | hypothetical protein/hypothetical protein |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base G (30/45); total (31/46) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.97e-01 |
AGAGAAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGAT > REL606/1886108‑1886255
|
agagAAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTa > 1:923710/1‑76 (MQ=255)
agaAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGcc > 1:1508838/1‑76 (MQ=255)
gaAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCt < 2:1897911/76‑1 (MQ=255)
aaGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACATAACTGTGCCTc < 1:113791/76‑1 (MQ=255)
aaGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTCTGCCTc < 2:1968990/76‑1 (MQ=255)
gTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATACACAGAACTGTGCCTTGTTTa < 1:123250/76‑1 (MQ=255)
gTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTa > 2:621066/1‑76 (MQ=255)
tATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTaa < 2:550439/76‑1 (MQ=255)
ttaaacgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAAcc > 1:1877718/4‑76 (MQ=255)
ttCAACCTCANCGAGTTTACTNAGGACTTCTTTAATGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAAcc > 2:2007282/1‑76 (MQ=255)
aacgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGa > 2:907335/1‑76 (MQ=255)
aacgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGa > 2:710027/1‑76 (MQ=255)
aacgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGa < 1:898509/76‑1 (MQ=255)
aacgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGa > 1:787702/1‑76 (MQ=255)
cgtcaacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGaaa < 1:221822/76‑1 (MQ=255)
gtcaacgtGTTGCCTCATAGCTTCTATACTGAAAATGCCAAACATAAACAGAACTGTGCCTCGTTTATCCCGAAAt < 2:45464/76‑1 (MQ=255)
caacgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCt > 1:922679/1‑76 (MQ=255)
acgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGt < 1:834578/76‑1 (MQ=255)
cgtGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGtt < 2:204484/76‑1 (MQ=255)
gtgtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTa < 2:426818/76‑1 (MQ=255)
gtgtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTa > 2:1943282/1‑76 (MQ=255)
gtgtTTACTCAGGACATCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTa > 1:187856/1‑76 (MQ=255)
tgtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTAt < 1:455680/76‑1 (MQ=255)
tgtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTAt < 2:1939047/76‑1 (MQ=255)
gtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATc > 1:1439063/1‑76 (MQ=255)
gtTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAAACGGTTATc < 1:1901700/76‑1 (MQ=255)
gtTTACTCAGGACTTCTAGACTGATAGTCGCACACATAACCAGCACTGAGCCTCGTTTAAACCGAAATCTGCTATc > 1:2047243/1‑76 (MQ=255)
gtTTACACATGACTTCTGCACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACNCGNAATCTGTTATc > 2:318390/1‑76 (MQ=255)
tACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATcaca > 2:1490813/1‑76 (MQ=255)
aCTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACAt < 1:1006258/76‑1 (MQ=255)
aCTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACAt < 1:1359458/76‑1 (MQ=255)
aCTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACAt < 2:783044/76‑1 (MQ=255)
cTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATa < 1:663534/76‑1 (MQ=255)
cTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATa < 1:567550/76‑1 (MQ=255)
tCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATAc > 2:106799/1‑76 (MQ=255)
cAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACACGAAATCTGTTATCACATACa > 2:1092596/1‑76 (MQ=255)
ggACTTCTTTACTGAAAATGCCACACATAAACAGAACTNTGCCTCGTTTAACCCGAAATCTGTTATCACATACAAc < 1:1983636/76‑1 (MQ=255)
ggACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAAc < 1:806110/76‑1 (MQ=255)
cttcttTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGtt < 2:693121/76‑1 (MQ=255)
cttcttTACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGtt < 2:963210/76‑1 (MQ=255)
tttACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAAtt < 1:517188/76‑1 (MQ=255)
ttACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTa > 1:862296/1‑76 (MQ=255)
tACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTAt > 1:424633/1‑76 (MQ=255)
tACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTAt < 1:1161972/76‑1 (MQ=255)
tACTGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTAt > 2:1439799/1‑76 (MQ=255)
tGAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGc > 1:976968/1‑76 (MQ=255)
gAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCa < 1:1072600/76‑1 (MQ=255)
gAAAATGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCa < 1:867416/76‑1 (MQ=255)
gAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCa > 2:1740180/1‑76 (MQ=255)
aaaaTGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCaa > 2:1845648/1‑76 (MQ=255)
aaaTGCCACGCATAAACAGAACTCTGCCTCGTTTAACCCGAAATCTGTTATCACATACNACGTTAATTATGGCAAg < 1:259854/76‑1 (MQ=255)
aaaTGCCACACATAAACAGAACAGTNCATCGTTTAACCCGAAATCTCNTATTACATACAACGTTAATTATGGCAAg < 1:305031/76‑1 (MQ=255)
aaTGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGc < 2:273856/76‑1 (MQ=255)
aaTGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGc > 2:110565/1‑76 (MQ=255)
aaTGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGc < 2:273870/76‑1 (MQ=255)
tGCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCa > 1:850840/1‑76 (MQ=255)
gCCACACATAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTCATTATGGCAAGCCAt > 1:1688357/1‑76 (MQ=255)
cacacaTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCAttt > 2:1556452/1‑76 (MQ=255)
cacaTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCAttttt < 2:1145673/76‑1 (MQ=255)
cacaTAAACAGAACTGTAACTTGTTTAACCCGAAATCTGTTATCCCATCCACCGTTAATTATGGCAAGCCAttttt < 2:984990/76‑1 (MQ=255)
caTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTaa < 1:367918/76‑1 (MQ=255)
caTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTaa < 2:1885346/76‑1 (MQ=255)
caTAAACAGAACTGGGCGTGGTGTAACCCGAAATCTGTTATCACATACAACTTTATTTATGGCAAGCCATTTTTaa < 1:103794/76‑1 (MQ=255)
aTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTaaa < 1:755984/76‑1 (MQ=255)
aTAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTaaa < 2:366364/76‑1 (MQ=255)
tAAACAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAAc > 2:1345751/1‑76 (MQ=255)
aaaCAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACa > 2:917508/1‑76 (MQ=255)
aaCAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACAt < 2:1583976/76‑1 (MQ=255)
aCAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATg < 1:1272135/76‑1 (MQ=255)
aCAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTCAATTATGGCAAGCCATTTTTAAACATg < 1:1824099/76‑1 (MQ=255)
cAGAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGt > 1:528938/1‑76 (MQ=255)
cAGAACTGTGCCTCGTTTAACCCGAAATCTGTTACAACATAAAAGGTTAATTATGCAAAGCCATTTTTAAA‑ATGtc > 2:634662/1‑76 (MQ=255)
cAGAACTGTGCCNCGNTTAACCCGAAATCTGTTANCACATAGAACGTTAATTATGGCAAGCCATTTTTAAACATGt < 1:1674387/76‑1 (MQ=255)
gAACTGTGCCTCGTTTAACCCNAANTCTGTTAGCACATACAACGTTNATTATGGNANGCCATTTTTAAACATGtct > 2:303337/1‑76 (MQ=255)
gAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGtct < 2:1565423/76‑1 (MQ=255)
gAACTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTGTAAACATGtct < 1:115094/76‑1 (MQ=255)
aaCTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGtctc < 1:912065/76‑1 (MQ=255)
aCTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCg < 1:1154080/76‑1 (MQ=255)
aCTGTGCCTCGTTTAACCCAAAATCTGTTGTCACATACAAGGTTAATTATGGCACGCCATTTTTAAACATGTCTCg < 2:28557/76‑1 (MQ=255)
cTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGa > 1:993995/1‑76 (MQ=255)
cTGTGCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGa < 2:1362560/76‑1 (MQ=255)
tgtgCCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGAt > 1:984981/1‑76 (MQ=255)
|
AGAGAAGCGGTATTCAACGTCAACGTGTTTACTCAGGACTTCTTTACTGAAAATGCCACACATAAACAGAACTGTACCTCGTTTAACCCGAAATCTGTTATCACATACAACGTTAATTATGGCAAGCCATTTTTAAACATGTCTCGAT > REL606/1886108‑1886255
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
