Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I1 R1
|
15 |
61.9 |
4096487 |
94.5% |
3871180 |
75.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
1,932,316 |
(GCA)3→2 |
coding (105‑107/972 nt) |
yecP → |
predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
1932312 = | 2 (0.030) | 55 (0.960) |
41/136 |
0.3 |
96.7% |
coding (101/972 nt) |
yecP |
predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase |
| ? | REL606 |
= 1932308 |
2 (0.030) | coding (97/972 nt) |
yecP |
predicted S‑adenosyl‑L‑methionine‑dependent methyltransferase |
GCAATAAATCAAGACGATACGGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1932392‑1932312
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgctCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTTTTGGCAATCA < REL606/1932308‑1932240
GCAATAAATCAAGACGATACGGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTG < 1:1167726/76‑1
AATAAATCAAGACGATACGGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCT < 2:722237/76‑1
TAAATCAAGACGATACGGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGC > 1:1211872/1‑76
TAAATCAAGACGATACGGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGC > 2:222753/1‑76
AATCAAGACGATACGGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTC < 1:1644105/76‑1
AGACGATACGGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCT < 2:185919/76‑1
AGACGATACGGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCT > 1:1543956/1‑76
TACGGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGT > 2:616061/1‑76
ACGGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTT < 2:1013324/76‑1
CGGTTTAATTTCAGGTAGAAACGCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTA < 2:163013/76‑1
GGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAAAAACCCGTGCTGCTCGCGCTGCCAGTTAG > 2:1194198/1‑76
TTTAGTTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCA > 1:1917746/1‑76
TTTAATTTCAGGTAGAAACTCCACCGCNTTTGACCACTGATTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCA > 1:1797687/1‑76
TTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAA > 1:1387972/1‑76
TANTTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGGNAT < 2:1657956/76‑1
AATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATC > 1:1457529/1‑76
ATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCT < 2:973360/76‑1
AGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCG > 1:1502397/1‑76
TAGAAACTCCANCGNGTTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCATCTAGCAATCTGGGCGGGC < 2:326459/76‑1
TAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGC > 1:801457/1‑76
TAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGC < 2:582288/76‑1
TAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGC > 1:854749/1‑76
AGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCA > 2:1049698/1‑76
ACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCGGCGT < 2:960371/76‑1
CTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTT > 2:179930/1‑76
CACCGCATTTGACCNCTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGTAATCTGCGCAGGCAGCGTTTCG < 1:1756754/76‑1
CACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCTCTGCCAGTTAGCNATCTGCGGTGNCAGAGTTTCG < 2:2015893/76‑1
CACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCG < 2:1695354/76‑1
CATTTGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGAGTTTCGAGCCA > 2:1298226/1‑76
TGACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCCGTGT > 2:621868/1‑76
GACCACTGCTTAAACACCCCGTGCTGCTCGCGCTGCCGGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTG < 2:542707/76‑1
GACCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTG > 1:1848051/1‑76
ACNACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGNGA > 2:1668689/1‑76
cccCTGCTTAACCACCCCGTGCTGCTGGCGCTGCCAGTTAGCAATCTGTGCGGGCAGCGTTTCGAGCCAGTGTGAA < 2:807443/73‑1
CCACTGCTTAAACACCCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAA < 2:766131/76‑1
CCACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTCTCGAGCCAGTGTGAg > 1:1678816/1‑75
CACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAA > 2:1048220/1‑76
ACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAG > 2:208852/1‑76
ACTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAG > 2:1873803/1‑76
CTGCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGA > 2:835852/1‑76
GCTTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGGGTGAAAGATG > 2:1042255/1‑76
TTAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGAT > 2:1958486/1‑76
TAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATT > 2:1024555/1‑76
TAAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATT > 1:275914/1‑76
gAACACCCCGTGCTGCTCGCGCTGCCAGTGAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTT < 2:1759308/75‑1
AAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTT > 2:1193597/1‑76
AAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTT > 2:1855723/1‑76
AAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTT > 2:615039/1‑76
AAACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGCGTGAAAGATGATTT > 2:1681614/1‑76
AACAACCCGTGCTGCTCGCGCTGCCAGTTAGCAAACTNCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTTT > 1:1992049/1‑76
ctcCCCGTGCTGCCCGCGCTGCCAGTTAGCAATCTGCGGGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTTTTG < 2:1048986/73‑1
CAACCCGTGCTGTTCGCGCTGCCAGTTAGCAACCTGCGCGGGCAGCGTTTCGAGCCAGTGTGACAGATGGATTTTG > 2:70624/1‑76
CAACCCGTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGACCTTTG < 1:1912700/76‑1
cACCCGTGCTGCGCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTTTTGG < 2:145255/75‑1
acCCCGTGCTGCTGGCGCTGCCAGTTAGCAATCGGGGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTTTTGG < 2:1143893/74‑1
acCCCGTGCTGCTCGCGCAGCCGGTTANCANTCNGCGCGGGNAGTGTTGCGAGCCAGTGTGAAAGATGATTTTTGG < 1:1760604/74‑1
CCCGTCCTGCTCGCCCGGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTTTTGGCA < 2:585588/76‑1
CCGTGCTGCTCGCGCTGTCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTTTTGGCAA > 1:2028471/1‑76
GTGCTGCTCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTTTTGGCAATC > 1:928327/1‑76
TGCGGCGCGCGCGGCCAGTAAGCACTCGGCGCGGGCGGCGTTTCGAGCCAGTGTGAAAGATGATTTTTGGCAATCA < 1:579339/76‑1
GCAATAAATCAAGACGATACGGTTTAATTTCAGGTAGAAACTCCACCGCATTTGACCACTGCTTAAACAACCCGTGCTGCT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < REL606/1932392‑1932312
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tgctgctCGCGCTGCCAGTTAGCAATCTGCGCGGGCAGCGTTTCGAGCCAGTGTGAAAGATGATTTTTGGCAATCA < REL606/1932308‑1932240
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
