Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A122 F1 I1 R1
|
27 |
151.2 |
10056804 |
92.4% |
9292486 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
REL606 |
3,136,084 |
A→G |
intergenic (+121/+42) |
cca → / ← uppP |
fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | REL606 | 3,136,084 | 0 | A | G | 100.0%
| 526.9
/ NA
| 125 | intergenic (+121/+42) | cca/uppP | fused tRNA nucleotidyl transferase/2'3'‑cyclic phosphodiesterase/2'nucleotidase and phosphatase/undecaprenyl pyrophosphate phosphatase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (54/71); total (54/71) |
Only 100 of 130 total aligned reads displayed.
AGAGGGTTA‑GGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGAGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACACCGCAGCC > REL606/3136011‑3136153
|
agagGGTTA‑GGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGc > 1:133866/1‑76 (MQ=255)
agagGGTTA‑GGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGc > 2:2327693/1‑76 (MQ=255)
gggggTTAGGGGGGGGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGc < 1:4719628/74‑1 (MQ=25)
gggTTA‑GGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAg > 1:4901731/1‑76 (MQ=255)
gTTA‑GGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAggg > 1:995450/1‑76 (MQ=255)
ttA‑GGGTGAGAGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGga < 2:4703284/76‑1 (MQ=255)
gtA‑GGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGga < 1:2026835/75‑1 (MQ=255)
tA‑GGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGgag > 2:2794017/1‑76 (MQ=255)
a‑GGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGgaga > 1:1540540/1‑76 (MQ=255)
a‑GGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGgaga > 1:4952805/1‑76 (MQ=255)
a‑GGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGgaga > 1:4463809/1‑76 (MQ=255)
ggggTGGGGGAAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGgaga < 1:1610174/75‑1 (MQ=25)
gggTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGaa < 2:2116430/76‑1 (MQ=255)
gggTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGaa < 2:1646250/76‑1 (MQ=255)
gggTGAGGGAAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGaa < 2:4402612/76‑1 (MQ=255)
ggTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGaaa < 2:4232706/76‑1 (MQ=255)
ggTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGaaa < 2:3732594/76‑1 (MQ=255)
tGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTGCAGGGCGAGGGAGAAAAc > 1:3091340/1‑76 (MQ=255)
tGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAc > 1:1043015/1‑76 (MQ=255)
tGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAc > 1:3887537/1‑76 (MQ=255)
tGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAc > 1:3489135/1‑76 (MQ=255)
gggggAACAGACCAGCACCGGTGCGAACAATCCCCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAccc < 1:1118416/75‑1 (MQ=37)
ggggcAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAccc < 2:2650250/75‑1 (MQ=255)
ggggaAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAAccc < 2:3823156/75‑1 (MQ=255)
gggcAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCg < 2:3127149/76‑1 (MQ=255)
gggAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCgg < 2:4031731/76‑1 (MQ=255)
ggAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGc < 2:3120015/76‑1 (MQ=255)
aCAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTg < 2:3647279/76‑1 (MQ=255)
cAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGc > 2:340610/1‑76 (MQ=255)
aGACCAGCACCGGTGCGAACAATCCCCCCCCCCCCGGCCCTCTCCCTACAGGGCGAGGGACAAAACCCGGCCTGCt < 1:4064259/76‑1 (MQ=38)
aGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCt < 2:2934389/76‑1 (MQ=255)
aGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCt < 2:2934388/76‑1 (MQ=255)
ccAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTccc > 1:2089688/1‑76 (MQ=255)
ccAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTccc > 1:2439361/1‑76 (MQ=255)
cAGCGCCGTTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCg < 1:4187508/76‑1 (MQ=37)
cAGCACCGGTGCGAACAATCGCCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCg < 2:2396056/76‑1 (MQ=38)
cAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCg < 2:2485878/76‑1 (MQ=255)
cAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCg < 1:3261586/76‑1 (MQ=255)
gCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGaa < 2:295549/76‑1 (MQ=255)
gCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGaa > 1:473767/1‑76 (MQ=255)
cACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAAc > 1:3633358/1‑76 (MQ=255)
cGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCGGGCCTGCCACCGAACCtt > 1:3153653/1‑76 (MQ=37)
cGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCtt < 2:3622509/76‑1 (MQ=255)
cGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCtt < 2:4990797/76‑1 (MQ=255)
ggTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCttt < 2:3252796/76‑1 (MQ=255)
gTGCGAACAATCACCCCCGCCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCtttt < 2:3601082/76‑1 (MQ=255)
gTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCtttt < 2:764975/76‑1 (MQ=255)
gTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCtttt < 1:679557/76‑1 (MQ=255)
gCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTtct > 1:2176016/1‑76 (MQ=255)
gCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTtcc > 2:4313688/1‑75 (MQ=255)
cGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTtctc > 2:3951521/1‑76 (MQ=255)
cGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTtctc < 2:4072682/76‑1 (MQ=255)
cGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTtctc > 2:64496/1‑76 (MQ=255)
gAACAATCCCCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtca < 1:3424073/76‑1 (MQ=255)
gAACAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtca < 2:317945/76‑1 (MQ=255)
aaCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaa > 2:1561038/1‑76 (MQ=255)
aaCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaa > 2:3149503/1‑76 (MQ=255)
aaCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaa < 2:457016/76‑1 (MQ=255)
aaCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaa < 1:1386484/76‑1 (MQ=255)
aCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaat > 1:1683788/1‑76 (MQ=255)
aCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaat > 1:4003660/1‑76 (MQ=255)
aCAATCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaat < 1:4986501/76‑1 (MQ=255)
aaTCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaatca < 1:468616/76‑1 (MQ=255)
aaTCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCtcaatca > 2:724086/1‑76 (MQ=255)
tCACCCCCACCCCGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCaaa < 1:1955336/76‑1 (MQ=255)
cccccccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCaaaa < 1:2992580/74‑1 (MQ=255)
cacccccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCaaaa > 2:1522804/1‑76 (MQ=255)
acccccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAg > 2:4624190/1‑76 (MQ=255)
acccccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAg < 1:4954448/76‑1 (MQ=255)
ccccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGaa < 1:331039/76‑1 (MQ=255)
cccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAac < 1:3243118/76‑1 (MQ=255)
cccaccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAac > 1:1970146/1‑76 (MQ=255)
caccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAacac > 2:5005597/1‑76 (MQ=255)
caccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAacac > 2:4421172/1‑76 (MQ=255)
accccGGCCCTCTCCCTACAGGGCGAGGGAGAAATCCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACg < 1:2914457/76‑1 (MQ=255)
accccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACg > 1:4294288/1‑76 (MQ=255)
ccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGa < 1:2864564/76‑1 (MQ=255)
ccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGa < 1:3705804/76‑1 (MQ=255)
ccccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGa > 2:4684635/1‑76 (MQ=255)
ccGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACa < 1:3086149/76‑1 (MQ=255)
cGGCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACAt < 1:3026184/76‑1 (MQ=255)
ggCCCTCTCCCTACAGGGCGAGGGAGAAATCCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATa < 1:865302/76‑1 (MQ=255)
ggCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATa < 1:1095069/76‑1 (MQ=255)
ggCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATa < 2:2603766/76‑1 (MQ=255)
gCCCTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATac < 2:3768730/76‑1 (MQ=255)
cccTCTCCCTACAGGGCGGGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca < 2:4588269/76‑1 (MQ=255)
cccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca > 2:2851025/1‑76 (MQ=255)
cccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca > 2:2631024/1‑76 (MQ=255)
cccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca > 2:4741764/1‑76 (MQ=255)
cccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca < 2:3209185/76‑1 (MQ=255)
cccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATaca > 1:2221399/1‑76 (MQ=255)
ccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATacac < 1:3886851/76‑1 (MQ=255)
ccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATacac < 2:510347/76‑1 (MQ=255)
ccTCTCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATacac < 2:3978915/76‑1 (MQ=255)
ctctCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACAcc > 2:2802677/1‑76 (MQ=255)
ctctCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACAcc < 2:2759085/76‑1 (MQ=255)
ctctCCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTCTCTCAATCAAAAGAACACGACATACAcc > 2:3701718/1‑76 (MQ=255)
tctcCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACACCg < 2:4645795/76‑1 (MQ=255)
tcCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACACCGCa < 2:333911/76‑1 (MQ=255)
tcCCTACAGGGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACACCGCa < 1:2540090/76‑1 (MQ=255)
|
AGAGGGTTA‑GGGTGAGGGGAACAGACCAGCACCGGTGCGAACAATCACCCCCACCCCGGCCCTCTCCCTACAGAGCGAGGGAGAAAACCCGGCCTGCTCCCGAACCTTTTCTCAATCAAAAGAACACGACATACACCGCAGCC > REL606/3136011‑3136153
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
