Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A122 F1 I1 R1
|
27 |
151.2 |
10056804 |
92.4% |
9292486 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
3,145,983 |
Δ9 bp |
coding (120‑128/1842 nt) |
rpoD → |
RNA polymerase sigma factor |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 3145982 | 2 (0.010) | 178 (1.200) |
89/148 |
0.1 |
98.4% |
coding (119/1842 nt) |
rpoD |
RNA polymerase sigma factor |
| ? | REL606 |
3145992 = |
4 (0.030) | coding (129/1842 nt) |
rpoD |
RNA polymerase sigma factor |
Only 100 of 182 total aligned reads displayed.
GTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145907‑3145982
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGG > REL606/3145992‑3146065
GTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCA < 2:4307324/76‑1
TGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAC < 2:3030432/76‑1
TGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAC < 1:1465604/76‑1
TGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCAC > 1:2727415/1‑76
GGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACA > 1:4836388/1‑76
TAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATC > 1:4177953/1‑76
AAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCA < 2:2697591/76‑1
AGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCAT < 2:2298286/76‑1
GGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATC < 1:4577507/76‑1
AGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCA < 1:3546428/76‑1
CAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAA > 1:1051882/1‑76
AAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAAT > 1:2923443/1‑76
AAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAAT < 1:2373833/76‑1
GCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGAT < 1:3927398/76‑1
CTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATC > 1:3284163/1‑76
CTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATC > 2:2597859/1‑76
TATCTGACCTATGCCGAGGTCAATGCCCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:3913870/76‑1
TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:949709/76‑1
TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:981491/76‑1
TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:2069772/76‑1
TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:2675085/76‑1
TATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCA < 1:1377484/76‑1
ATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAA < 2:2947106/76‑1
ATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAA < 2:4836388/76‑1
CTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACG > 2:3801616/1‑76
TGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGA > 2:693304/1‑76
TGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGA > 1:2801638/1‑76
TGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGA < 1:3176710/76‑1
GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGAC > 1:3656375/1‑76
GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGAC < 1:3826421/76‑1
GACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGAC < 2:4339073/76‑1
GACCTATGCCGAGGCCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGcc > 2:4399352/1‑74
ACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACA > 2:1022309/1‑76
CCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACAT < 1:2563508/76‑1
CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATG < 1:1274391/76‑1
CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATG < 1:1338821/76‑1
CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATG < 1:4740233/76‑1
CTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATG < 1:673702/76‑1
TATGCCGAGGACAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACA < 2:3472982/73‑1
ATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGG < 2:3628977/76‑1
ATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGG < 2:4190291/76‑1
ATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGG < 2:1894941/76‑1
ATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGG < 2:4905835/76‑1
CCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCAT > 2:3439443/1‑76
CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT < 2:1901253/76‑1
CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT > 2:1347315/1‑76
CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT > 2:4240519/1‑76
CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT < 1:2210426/76‑1
CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT < 1:4089138/76‑1
CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT < 1:4623594/76‑1
CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT > 1:4952385/1‑76
CGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATT < 1:3134924/76‑1
GAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTC < 1:1144001/76‑1
GAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTC > 1:1742402/1‑76
GGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAG < 2:4699366/76‑1
TCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGT > 2:4908998/1‑76
TCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGT > 1:4525815/1‑76
TCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGT > 2:4713838/1‑76
TCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGT > 2:3774678/1‑76
CAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTG < 2:4688972/76‑1
AATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGA > 2:2732345/1‑76
AATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGA > 1:4276914/1‑76
ATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGAT > 2:4258983/1‑76
ATGACCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGAT > 1:222153/1‑76
CCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAA > 1:2917917/1‑76
CCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAA > 2:1968259/1‑76
CCATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAA < 2:5011561/76‑1
ATCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGA < 1:2451318/76‑1
TCTGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAA > 2:668624/1‑76
TGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC < 1:1487240/76‑1
TGCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGC < 2:4868357/76‑1
GCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCA > 2:3959873/1‑76
GCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCA > 2:1702479/1‑76
GCCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCA > 1:3555412/1‑76
CCGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCAC < 1:2873792/76‑1
CGGAAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACC > 2:2513205/1‑76
GAAGATATCGTCGATTAAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGG > 2:3995453/1‑76
AAGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGA < 2:3214208/76‑1
AGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGAT < 2:4806469/76‑1
AGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGAT < 2:2461960/76‑1
AGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGAT < 1:734993/76‑1
AGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGAT < 2:1654130/76‑1
AGATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGAT < 2:1303530/76‑1
GATATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATG < 2:3140044/76‑1
GATATCGGCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATG < 2:1501763/76‑1
ATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCG < 1:1305196/76‑1
ATCGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCG < 2:2341718/76‑1
CGTCGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGAT < 2:2177582/76‑1
CGATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGAT < 2:2138560/76‑1
ATTCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCT < 1:716852/76‑1
TCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGA < 2:3187174/76‑1
TCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGA < 2:2675572/76‑1
TCAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGA > 2:1112223/1‑76
CAGATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGAT < 1:4067751/76‑1
GATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGC < 2:629621/76‑1
GATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGC < 1:2082083/76‑1
ATCACATCATCGAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCT > 2:2172770/1‑76
ATCACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCT > 1:1019764/1‑76
CACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGG > 1:1945923/1‑76
CACATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGG > 2:3387937/1‑76
GTGGTAAGGAGCAAGGCTATCTGACCTATGCCGAGGTCAATGACCATCTGCCGGAAGATATCGTCGATTCAGATCA‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/3145907‑3145982
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑aCATCATCCAAATGATCAACGACATGGGCATTCAGGTGATGGAAGAAGCACCGGATGCCGATGATCTGATGCTGG > REL606/3145992‑3146065
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
