Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A43 F1 I1 R1 17 61.8 3886062 97.4% 3785024 76.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
MC JC REL606 1,670,487 Δ9 bp coding (964‑972/1374 nt) uidB ← glucuronide transporter

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ REL606 1670487 1670495 9 55 [0] [0] 55 uidB glucuronide transporter

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? REL606 = 16704860 (0.000)48 (0.860) 37/136 0.4 100% coding (973/1374 nt) uidB glucuronide transporter
?REL606 1670496 = 0 (0.000)coding (963/1374 nt) uidB glucuronide transporter

GATK/CNVnator alignment

N/A