Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A7 F1 I1 R1
|
20 |
54.5 |
3547384 |
95.1% |
3373562 |
76.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| JC |
REL606 |
1,332,137 |
Δ27 bp |
intergenic (+120/‑64) |
topA → / → cysB |
DNA topoisomerase I/DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
REL606 |
= 1332136 | 1 (0.020) | 62 (1.150) |
49/148 |
0.1 |
98.4% |
intergenic (+119/‑91) |
topA/cysB |
DNA topoisomerase I/DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding |
| ? | REL606 |
1332164 = |
1 (0.020) | intergenic (+147/‑63) |
topA/cysB |
DNA topoisomerase I/DNA‑binding transcriptional dual regulator, O‑acetyl‑L‑serine‑binding |
CGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1332061‑1332136
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACATGAAATTACAA > REL606/1332164‑1332238
CGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTT < 1:202160/76‑1
GGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTT < 1:725232/76‑1
GGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTT < 2:1226565/76‑1
GGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTT < 2:230899/76‑1
CTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTC < 2:563658/76‑1
CTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTC > 2:900434/1‑76
TTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCA < 2:1103471/76‑1
TTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACC > 1:1199097/1‑76
TTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCG > 2:499784/1‑76
ATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCC < 2:1674264/76‑1
TGCATATAATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAG > 1:62996/1‑76
GCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGG < 1:503547/76‑1
ATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTG > 1:135230/1‑76
ATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTG < 2:172569/76‑1
ATTATTTTCTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTG > 1:1642041/1‑76
ATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACG > 2:809058/1‑76
ATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGAGTGACG < 1:1643729/76‑1
TTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAA > 1:855117/1‑76
TCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAA < 2:382716/76‑1
CTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAAC > 1:371324/1‑76
TTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACG > 1:349815/1‑76
CACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCCGGTGTGACGAAAAAACGAT < 1:1507365/76‑1
CACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGAT < 2:1142817/76‑1
CACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGAT > 2:502822/1‑76
CACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGAT > 1:360113/1‑76
CACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGAT < 1:203962/76‑1
CACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGAT > 1:1602023/1‑76
ACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATG > 2:964700/1‑76
ACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTT < 2:969089/76‑1
ACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTT > 1:1311448/1‑76
CTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCT > 1:1174464/1‑76
CTATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCT < 2:964756/76‑1
ATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGA > 1:828128/1‑76
ATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGA > 1:1605011/1‑76
ATACACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGA < 2:1127673/76‑1
ACTAAGGCTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGC > 1:1428810/1‑76
CTATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAG < 1:330724/76‑1
TATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGT > 1:1119483/1‑76
TATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGT > 2:1220454/1‑76
ATAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTG > 2:79121/1‑76
TAAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGG > 2:1695662/1‑76
AAATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGA > 1:1134944/1‑76
AATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTTATGGCGTCTAAGTGGAT < 1:1360129/76‑1
AATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGAT < 2:1563800/76‑1
ATGATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATG < 1:367489/76‑1
TGATATAGTGGTTATAGTTTAGTCCCCCGCCAGGTGTGACGGAAAAACGATGTTNTGATGGCATCNAAGTGGATGG < 2:1742316/76‑1
ATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTT > 2:870193/1‑76
ATATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTT < 2:48402/76‑1
ATACAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTT > 2:923089/1‑76
TATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTT < 1:46134/76‑1
ATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTA > 2:308423/1‑76
ATAGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATAGTTTA > 2:70355/1‑76
AGTGGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAAC > 2:1119884/1‑76
TGGTTATAGTTTAGTCCCCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACAT < 1:835936/76‑1
GGTTATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTGAGTGGATGGTTTAACATG < 1:1668985/76‑1
GTTATAGTTTAGTCGCCTGACATGTGTGACGAAAAAACGATGTTCTGATGGGGTCTAAGTGGATGGTTTAACATGA < 1:81248/76‑1
GTTATAGTCTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACATGA < 2:314846/76‑1
TTANAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACATGAA > 1:1589163/1‑76
TATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACATGAAA > 2:1379861/1‑76
ATAGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACATGAAAT < 2:1041439/76‑1
AGTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACATGAAATTA > 2:526944/1‑76
GTTTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACATGAAATTAC > 1:270557/1‑76
TTTAGTCACTCGCCATGTGTGACGATAAAACGATGATCTGATGGCGTCTAAGTGGATGGTCTTACATGAAATTACA < 1:20167/76‑1
TTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACATGAAATTACAA > 2:439468/1‑76
TTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACATGAAATTACAA > 2:1529701/1‑76
CGGCCCTTTTTTATTGCATATTATTTTTTCTTCACACCTATACACTAAGGCTATAAATGATATAGTGGTTATAGTT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > REL606/1332061‑1332136
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑tTAGTCACCCGCCAGGTGTGACGAAAAAACGATGTTCTGATGGCGTCTAAGTGGATGGTTTAACATGAAATTACAA > REL606/1332164‑1332238
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
